Felix e61af9cf05
update vector search license (#784)
* Update interface.cc

* Update config.h

* Update data.h

* Update graph.h
2021-06-04 13:50:49 +08:00

366 lines
9.8 KiB
C++

//MIT License
//
//Copyright (c) 2021 Mobius Authors
//Permission is hereby granted, free of charge, to any person obtaining a copy
//of this software and associated documentation files (the "Software"), to deal
//in the Software without restriction, including without limitation the rights
//to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
//copies of the Software, and to permit persons to whom the Software is
//furnished to do so, subject to the following conditions:
//The above copyright notice and this permission notice shall be included in all
//copies or substantial portions of the Software.
//THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
//IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
//FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
//AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
//LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
//OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
//SOFTWARE.
//from https://github.com/sunbelbd/mobius/blob/e2d166547d61d791da8f06747a63b9cd38f02c71/data.h
#pragma once
#include<memory>
#include<vector>
#include<math.h>
#include"config.h"
#define ZERO_EPS 1e-10
#define _SCALE_WORLD_DENSE_DATA
#ifdef _SCALE_WORLD_DENSE_DATA
//dense data
class Data{
private:
std::unique_ptr<value_t[]> data;
size_t num;
size_t curr_num = 0;
int dim;
public:
value_t mobius_pow = 2;
value_t max_ip_norm = 1;
value_t max_ip_norm2 = 1;
Data(size_t num, int dim) : num(num),dim(dim){
data = std::unique_ptr<value_t[]>(new value_t[num * dim]);
memset(data.get(),0,sizeof(value_t) * num * dim);
}
value_t* get(idx_t idx) const{
return data.get() + idx * dim;
}
template<class T>
dist_t ipwrap_l2_query_distance(idx_t a,T& v) const{
auto pa = get(a);
dist_t ret = 0;
dist_t normu = 0;
for(int i = 0;i < dim;++i){
auto diff = (*(pa + i) / max_ip_norm) - v[i];
ret += diff * diff;
normu += (*(pa + i)) * (*(pa + i));
}
ret += 1 - normu / max_ip_norm2;
return ret;
}
template<class T>
dist_t ipwrap_l2_build_distance(idx_t a,T& v) const{
auto pa = get(a);
dist_t ret = 0;
dist_t normu = 0;
dist_t normv = 0;
for(int i = 0;i < dim;++i){
auto diff = *(pa + i) - v[i];
ret += diff * diff;
normu += (*(pa + i)) * (*(pa + i));
normv += v[i] * v[i];
}
dist_t wrap_termu = sqrt(1 - normu / max_ip_norm2);
dist_t wrap_termv = sqrt(1 - normv / max_ip_norm2);
dist_t diff_wrap = wrap_termu - wrap_termv;
ret = ret / max_ip_norm2 + diff_wrap * diff_wrap;
return ret;
}
template<class T>
dist_t l2_distance(idx_t a,T& v) const{
auto pa = get(a);
dist_t ret = 0;
for(int i = 0;i < dim;++i){
auto diff = *(pa + i) - v[i];
ret += diff * diff;
}
return ret;
}
template<class T>
dist_t negative_inner_prod_distance(idx_t a,T& v) const{
auto pa = get(a);
dist_t ret = 0;
for(int i = 0;i < dim;++i){
ret -= (*(pa + i)) * v[i];
}
return ret;
}
template<class T>
dist_t negative_cosine_distance(idx_t a,T& v) const{
auto pa = get(a);
dist_t ret = 0;
value_t lena = 0,lenv = 0;
for(int i = 0;i < dim;++i){
ret += (*(pa + i)) * v[i];
lena += (*(pa + i)) * (*(pa + i));
lenv += v[i] * v[i];
}
int sign = ret < 0 ? 1 : -1;
// return sign * (ret * ret / lena);// / lenv);
return sign * (ret * ret / lena / lenv);
}
template<class T>
dist_t mobius_l2_distance(idx_t a,T& v) const{
auto pa = get(a);
dist_t ret = 0;
value_t lena = 0,lenv = 0;
for(int i = 0;i < dim;++i){
lena += (*(pa + i)) * (*(pa + i));
lenv += v[i] * v[i];
}
value_t modifier_a = pow(lena,0.5 * mobius_pow);
value_t modifier_v = pow(lenv,0.5 * mobius_pow);
if(fabs(modifier_a) < ZERO_EPS)
modifier_a = 1;
if(fabs(modifier_v) < ZERO_EPS)
modifier_v = 1;
for(int i = 0;i < dim;++i){
value_t tmp = (*(pa + i)) / modifier_a - v[i] / modifier_v;
ret += tmp * tmp;
}
return ret;
}
template<class T>
dist_t real_nn(T& v) const{
dist_t minn = 1e100;
for(size_t i = 0;i < curr_num;++i){
auto res = l2_distance(i,v);
if(res < minn){
minn = res;
}
}
return minn;
}
std::vector<value_t> organize_point_mobius(const std::vector<std::pair<int,value_t>>& v){
std::vector<value_t> ret(dim,0);
value_t lena = 0;
for(const auto& p : v){
// ret[p.first] = p.second;
lena += p.second * p.second;
}
value_t modifier_a = pow(lena,0.5 * mobius_pow);
if(fabs(modifier_a) < ZERO_EPS)
modifier_a = 1;
for(const auto& p : v){
ret[p.first] = p.second / modifier_a;
}
return std::move(ret);
}
std::vector<value_t> organize_point(const std::vector<std::pair<int,value_t>>& v){
std::vector<value_t> ret(dim,0);
for(const auto& p : v){
if(p.first >= dim)
printf("error %d %d\n",p.first,dim);
ret[p.first] = p.second;
}
return std::move(ret);
}
value_t vec_sum2(const std::vector<std::pair<int,value_t>>& v){
value_t ret = 0;
for(const auto& p : v){
if(p.first >= dim)
printf("error %d %d\n",p.first,dim);
ret += p.second * p.second;
}
return std::move(ret);
}
void add(idx_t idx, std::vector<std::pair<int,value_t>>& value){
//printf("adding %zu\n",idx);
//for(auto p : value)
// printf("%zu %d %f\n",idx,p.first,p.second);
curr_num = std::max(curr_num,idx);
auto p = get(idx);
for(const auto& v : value)
*(p + v.first) = v.second;
}
void add_mobius(idx_t idx, std::vector<std::pair<int,value_t>>& value){
//printf("adding %zu\n",idx);
//for(auto p : value)
// printf("%zu %d %f\n",idx,p.first,p.second);
curr_num = std::max(curr_num,idx);
auto p = get(idx);
value_t lena = 0;
for(const auto& v : value){
*(p + v.first) = v.second;
lena += v.second * v.second;
}
value_t modifier_a = pow(lena,0.5 * mobius_pow);
if(fabs(modifier_a) < ZERO_EPS)
modifier_a = 1;
for(const auto& v : value){
*(p + v.first) = v.second / modifier_a;
}
}
inline size_t max_vertices(){
return num;
}
inline size_t curr_vertices(){
return curr_num;
}
void print(){
for(int i = 0;i < num && i < 10;++i)
printf("%f ",*(data.get() + i));
printf("\n");
}
int get_dim(){
return dim;
}
void dump(std::string path = "bfsg.data"){
FILE* fp = fopen(path.c_str(),"wb");
fwrite(data.get(),sizeof(value_t) * num * dim,1,fp);
fclose(fp);
}
void load(std::string path = "bfsg.data"){
curr_num = num;
FILE* fp = fopen(path.c_str(),"rb");
auto cnt = fread(data.get(),sizeof(value_t) * num * dim,1,fp);
fclose(fp);
}
};
template<>
dist_t Data::ipwrap_l2_build_distance(idx_t a,idx_t& b) const{
auto pa = get(a);
auto pb = get(b);
dist_t ret = 0;
dist_t normu = 0;
dist_t normv = 0;
for(int i = 0;i < dim;++i){
auto diff = *(pa + i) - *(pb + i);
ret += diff * diff;
normu += (*(pa + i)) * (*(pa + i));
normv += (*(pb + i)) * (*(pb + i));
}
dist_t wrap_termu = sqrt(1 - normu / max_ip_norm2);
dist_t wrap_termv = sqrt(1 - normv / max_ip_norm2);
dist_t diff_wrap = wrap_termu - wrap_termv;
ret = ret / max_ip_norm2 + diff_wrap * diff_wrap;
return ret;
}
template<>
dist_t Data::ipwrap_l2_query_distance(idx_t a,idx_t& b) const{
auto pa = get(a);
auto pb = get(b);
dist_t ret = 0;
dist_t normu = 0;
for(int i = 0;i < dim;++i){
auto diff = (*(pa + i) / max_ip_norm) - *(pb + i);
ret += diff * diff;
normu += (*(pa + i)) * (*(pa + i));
}
ret += 1 - normu / max_ip_norm2;
return ret;
}
template<>
dist_t Data::l2_distance(idx_t a,idx_t& b) const{
auto pa = get(a),
pb = get(b);
dist_t ret = 0;
for(int i = 0;i < dim;++i){
auto diff = *(pa + i) - *(pb + i);
ret += diff * diff;
}
return ret;
}
template<>
dist_t Data::negative_inner_prod_distance(idx_t a,idx_t& b) const{
auto pa = get(a),
pb = get(b);
dist_t ret = 0;
for(int i = 0;i < dim;++i){
ret -= (*(pa + i)) * (*(pb + i));
}
return ret;
}
template<>
dist_t Data::negative_cosine_distance(idx_t a,idx_t& b) const{
auto pa = get(a),
pb = get(b);
dist_t ret = 0;
value_t lena = 0,lenv = 0;
for(int i = 0;i < dim;++i){
ret += (*(pa + i)) * (*(pb + i));
lena += (*(pa + i)) * (*(pa + i));
lenv += (*(pb + i)) * (*(pb + i));
}
int sign = ret < 0 ? 1 : -1;
// return sign * (ret * ret / lena);
return sign * (ret * ret / lena / lenv);
}
template<>
dist_t Data::mobius_l2_distance(idx_t a,idx_t& b) const{
auto pa = get(a),
pb = get(b);
dist_t ret = 0;
value_t lena = 0,lenv = 0;
for(int i = 0;i < dim;++i){
lena += (*(pa + i)) * (*(pa + i));
lenv += (*(pb + i)) * (*(pb + i));
}
value_t modifier_a = pow(lena,0.5 * mobius_pow);
value_t modifier_v = pow(lenv,0.5 * mobius_pow);
if(fabs(modifier_a) < ZERO_EPS)
modifier_a = 1;
if(fabs(modifier_v) < ZERO_EPS)
modifier_v = 1;
for(int i = 0;i < dim;++i){
value_t tmp = (*(pa + i)) / modifier_a - (*(pb + i)) / modifier_v;
ret += tmp * tmp;
}
return ret;
}
#else
//sparse data
class Data{
public:
//TODO
};
#endif