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Add 4 retinal vessel segmentation benchmark (#315) * add 4 retinal vessel segmentation configs of UNet * fix flip augmentation * add unet benchmark on 4 medical datasets * fix hrf bug
2020-12-24 15:58:09 +08:00
# U-Net: Convolutional Networks for Biomedical Image Segmentation
## Introduction
[Improvement] Add tags for each README.md (#340)
2021-01-11 13:35:09 +08:00
[ALGORITHM]
Add 4 retinal vessel segmentation benchmark (#315) * add 4 retinal vessel segmentation configs of UNet * fix flip augmentation * add unet benchmark on 4 medical datasets * fix hrf bug
2020-12-24 15:58:09 +08:00
```latex
@inproceedings{ronneberger2015u,
title={U-net: Convolutional networks for biomedical image segmentation},
author={Ronneberger, Olaf and Fischer, Philipp and Brox, Thomas},
booktitle={International Conference on Medical image computing and computer-assisted intervention},
pages={234--241},
year={2015},
organization={Springer}
}
```
## Results and models
Add more UNet-based medical segmentation benchmark (#324) * Add UNet as backbone and FCN PSPNet DeepLabV3 as decode_head benchmark on 4 retinal vessel segmentation datasets * adjust README of UNet
2021-01-11 16:07:59 +08:00
### DRIVE
Fix sem_fpn and unet README.md (#492)
2021-04-18 17:56:53 +08:00
| Backbone | Head | Image Size | Crop Size | Stride | Lr schd | Mem (GB) | Inf time (fps) | Dice | config | download |
[Improvement] Add cfg link in modelzoo (#468)
2021-04-10 05:36:03 +08:00
| ----------- | --------- | ---------- | --------- | -----: | ------- | -------- | -------------: | ----: | ------------------------------------------------------------------------------------------------------------------------ | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| UNet-S5-D16 | FCN | 584x565 | 64x64 | 42x42 | 40000 | 0.680 | - | 78.67 | [config](https://github.com/open-mmlab/mmsegmentation/blob/master/configs/unet/fcn_unet_s5-d16_64x64_40k_drive.py) | [model](https://download.openmmlab.com/mmsegmentation/v0.5/unet/fcn_unet_s5-d16_64x64_40k_drive/fcn_unet_s5-d16_64x64_40k_drive_20201223_191051-26cee593.pth) | [log](https://download.openmmlab.com/mmsegmentation/v0.5/unet/fcn_unet_s5-d16_64x64_40k_drive/fcn_unet_s5-d16_64x64_40k_drive-20201223_191051.log.json) |
| UNet-S5-D16 | PSPNet | 584x565 | 64x64 | 42x42 | 40000 | 0.599 | - | 78.62 | [config](https://github.com/open-mmlab/mmsegmentation/blob/master/configs/unet/pspnet_unet_s5-d16_64x64_40k_drive.py) | [model](https://download.openmmlab.com/mmsegmentation/v0.5/unet/pspnet_unet_s5-d16_64x64_40k_drive/pspnet_unet_s5-d16_64x64_40k_drive_20201227_181818-aac73387.pth) | [log](https://download.openmmlab.com/mmsegmentation/v0.5/unet/pspnet_unet_s5-d16_64x64_40k_drive/pspnet_unet_s5-d16_64x64_40k_drive-20201227_181818.log.json) |
| UNet-S5-D16 | DeepLabV3 | 584x565 | 64x64 | 42x42 | 40000 | 0.596 | - | 78.69 | [config](https://github.com/open-mmlab/mmsegmentation/blob/master/configs/unet/deeplabv3_unet_s5-d16_64x64_40k_drive.py) | [model](https://download.openmmlab.com/mmsegmentation/v0.5/unet/deeplabv3_unet_s5-d16_64x64_40k_drive/deeplabv3_unet_s5-d16_64x64_40k_drive_20201226_094047-0671ff20.pth) | [log](https://download.openmmlab.com/mmsegmentation/v0.5/unet/deeplabv3_unet_s5-d16_64x64_40k_drive/deeplabv3_unet_s5-d16_64x64_40k_drive-20201226_094047.log.json) |
Add more UNet-based medical segmentation benchmark (#324) * Add UNet as backbone and FCN PSPNet DeepLabV3 as decode_head benchmark on 4 retinal vessel segmentation datasets * adjust README of UNet
2021-01-11 16:07:59 +08:00
### STARE
Fix sem_fpn and unet README.md (#492)
2021-04-18 17:56:53 +08:00
| Backbone | Head | Image Size | Crop Size | Stride | Lr schd | Mem (GB) | Inf time (fps) | Dice | config | download |
[Improvement] Add cfg link in modelzoo (#468)
2021-04-10 05:36:03 +08:00
| ----------- | --------- | ---------- | --------- | -----: | ------- | -------- | -------------: | ----: | -------------------------------------------------------------------------------------------------------------------------- | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
| UNet-S5-D16 | FCN | 605x700 | 128x128 | 85x85 | 40000 | 0.968 | - | 81.02 | [config](https://github.com/open-mmlab/mmsegmentation/blob/master/configs/unet/fcn_unet_s5-d16_128x128_40k_stare.py) | [model](https://download.openmmlab.com/mmsegmentation/v0.5/unet/fcn_unet_s5-d16_128x128_40k_stare/fcn_unet_s5-d16_128x128_40k_stare_20201223_191051-6ea7cfda.pth) | [log](https://download.openmmlab.com/mmsegmentation/v0.5/unet/fcn_unet_s5-d16_128x128_40k_stare/fcn_unet_s5-d16_128x128_40k_stare-20201223_191051.log.json) |
| UNet-S5-D16 | PSPNet | 605x700 | 128x128 | 85x85 | 40000 | 0.982 | - | 81.22 | [config](https://github.com/open-mmlab/mmsegmentation/blob/master/configs/unet/pspnet_unet_s5-d16_128x128_40k_stare.py) | [model](https://download.openmmlab.com/mmsegmentation/v0.5/unet/pspnet_unet_s5-d16_128x128_40k_stare/pspnet_unet_s5-d16_128x128_40k_stare_20201227_181818-3c2923c4.pth) | [log](https://download.openmmlab.com/mmsegmentation/v0.5/unet/pspnet_unet_s5-d16_128x128_40k_stare/pspnet_unet_s5-d16_128x128_40k_stare-20201227_181818.log.json) |
| UNet-S5-D16 | DeepLabV3 | 605x700 | 128x128 | 85x85 | 40000 | 0.999 | - | 80.93 | [config](https://github.com/open-mmlab/mmsegmentation/blob/master/configs/unet/deeplabv3_unet_s5-d16_128x128_40k_stare.py) | [model](https://download.openmmlab.com/mmsegmentation/v0.5/unet/deeplabv3_unet_s5-d16_128x128_40k_stare/deeplabv3_unet_s5-d16_128x128_40k_stare_20201226_094047-93dcb93c.pth) | [log](https://download.openmmlab.com/mmsegmentation/v0.5/unet/deeplabv3_unet_s5-d16_128x128_40k_stare/deeplabv3_unet_s5-d16_128x128_40k_stare-20201226_094047.log.json) |
Add more UNet-based medical segmentation benchmark (#324) * Add UNet as backbone and FCN PSPNet DeepLabV3 as decode_head benchmark on 4 retinal vessel segmentation datasets * adjust README of UNet
2021-01-11 16:07:59 +08:00
### CHASE_DB1
Add some publish information of implemented models (#508) * Add some publish information * Fix some readme omission.
2021-04-25 00:58:15 +08:00
| Backbone | Head | Image Size | Crop Size | Stride | Lr schd | Mem (GB) | Inf time (fps) | Dice | config | download |
| ----------- | --------- | ---------- | --------- | -----: | ------- | -------- | -------------: | ----: | -------------------------------------------------------------------------------------------------------------------------- | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
[Improvement] Add cfg link in modelzoo (#468)
2021-04-10 05:36:03 +08:00
| UNet-S5-D16 | FCN | 960x999 | 128x128 | 85x85 | 40000 | 0.968 | - | 80.24 | [config](https://github.com/open-mmlab/mmsegmentation/blob/master/configs/unet/fcn_unet_s5-d16_128x128_40k_chase_db1.py) | [model](https://download.openmmlab.com/mmsegmentation/v0.5/unet/fcn_unet_s5-d16_128x128_40k_chase_db1/fcn_unet_s5-d16_128x128_40k_chase_db1_20201223_191051-95852f45.pth) | [log](https://download.openmmlab.com/mmsegmentation/v0.5/unet/fcn_unet_s5-d16_128x128_40k_chase_db1/fcn_unet_s5-d16_128x128_40k_chase_db1-20201223_191051.log.json) |
| UNet-S5-D16 | PSPNet | 960x999 | 128x128 | 85x85 | 40000 | 0.982 | - | 80.36 | [config](https://github.com/open-mmlab/mmsegmentation/blob/master/configs/unet/pspnet_unet_s5-d16_128x128_40k_chase_db1.py) | [model](https://download.openmmlab.com/mmsegmentation/v0.5/unet/pspnet_unet_s5-d16_128x128_40k_chase_db1/pspnet_unet_s5-d16_128x128_40k_chase_db1_20201227_181818-68d4e609.pth) | [log](https://download.openmmlab.com/mmsegmentation/v0.5/unet/pspnet_unet_s5-d16_128x128_40k_chase_db1/pspnet_unet_s5-d16_128x128_40k_chase_db1-20201227_181818.log.json) |
| UNet-S5-D16 | DeepLabV3 | 960x999 | 128x128 | 85x85 | 40000 | 0.999 | - | 80.47 | [config](https://github.com/open-mmlab/mmsegmentation/blob/master/configs/unet/deeplabv3_unet_s5-d16_128x128_40k_chase_db1.py) | [model](https://download.openmmlab.com/mmsegmentation/v0.5/unet/deeplabv3_unet_s5-d16_128x128_40k_chase_db1/deeplabv3_unet_s5-d16_128x128_40k_chase_db1_20201226_094047-4c5aefa3.pth) | [log](https://download.openmmlab.com/mmsegmentation/v0.5/unet/deeplabv3_unet_s5-d16_128x128_40k_chase_db1/deeplabv3_unet_s5-d16_128x128_40k_chase_db1-20201226_094047.log.json) |
Add more UNet-based medical segmentation benchmark (#324) * Add UNet as backbone and FCN PSPNet DeepLabV3 as decode_head benchmark on 4 retinal vessel segmentation datasets * adjust README of UNet
2021-01-11 16:07:59 +08:00
### HRF
Add some publish information of implemented models (#508) * Add some publish information * Fix some readme omission.
2021-04-25 00:58:15 +08:00
| Backbone | Head | Image Size | Crop Size | Stride | Lr schd | Mem (GB) | Inf time (fps) | Dice | config | download |
| ----------- | --------- | ---------- | --------- | -----: | ------- | -------- | -------------: | ----: | -------------------------------------------------------------------------------------------------------------------------- | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
[Improvement] Add cfg link in modelzoo (#468)
2021-04-10 05:36:03 +08:00
| UNet-S5-D16 | FCN | 2336x3504 | 256x256 | 170x170 | 40000 | 2.525 | - | 79.45 | [config](https://github.com/open-mmlab/mmsegmentation/blob/master/configs/unet/fcn_unet_s5-d16_256x256_40k_hrf.py) | [model](https://download.openmmlab.com/mmsegmentation/v0.5/unet/fcn_unet_s5-d16_256x256_40k_hrf/fcn_unet_s5-d16_256x256_40k_hrf_20201223_173724-df3ec8c4.pth) | [log](https://download.openmmlab.com/mmsegmentation/v0.5/unet/fcn_unet_s5-d16_256x256_40k_hrf/fcn_unet_s5-d16_256x256_40k_hrf-20201223_173724.log.json) |
| UNet-S5-D16 | PSPNet | 2336x3504 | 256x256 | 170x170 | 40000 | 2.588 | - | 80.07 | [config](https://github.com/open-mmlab/mmsegmentation/blob/master/configs/unet/pspnet_unet_s5-d16_256x256_40k_hrf.py) | [model](https://download.openmmlab.com/mmsegmentation/v0.5/unet/pspnet_unet_s5-d16_256x256_40k_hrf/pspnet_unet_s5-d16_256x256_40k_hrf_20201227_181818-fdb7e29b.pth) | [log](https://download.openmmlab.com/mmsegmentation/v0.5/unet/pspnet_unet_s5-d16_256x256_40k_hrf/pspnet_unet_s5-d16_256x256_40k_hrf-20201227_181818.log.json) |
| UNet-S5-D16 | DeepLabV3 | 2336x3504 | 256x256 | 170x170 | 40000 | 2.604 | - | 80.21 | [config](https://github.com/open-mmlab/mmsegmentation/blob/master/configs/unet/deeplabv3_unet_s5-d16_256x256_40k_hrf.py) | [model](https://download.openmmlab.com/mmsegmentation/v0.5/unet/deeplabv3_unet_s5-d16_256x256_40k_hrf/deeplabv3_unet_s5-d16_256x256_40k_hrf_20201226_094047-3a1fdf85.pth) | [log](https://download.openmmlab.com/mmsegmentation/v0.5/unet/deeplabv3_unet_s5-d16_256x256_40k_hrf/deeplabv3_unet_s5-d16_256x256_40k_hrf-20201226_094047.log.json) |