[Feature] Add support for the focal Tversky loss (#2791)

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## Motivation

The focal Tversky loss was proposed in https://arxiv.org/abs/1810.07842.
It has nearly 600 citations and has been shown to be extremely useful
for highly imbalanced (medical) datasets. To add support for the focal
Tversky loss, only few lines of changes are needed for the Tversky loss.

## Modification

Add `gamma` as (optional) argument in the constructor of `TverskyLoss`.
This parameter is then passed to `tversky_loss` to compute the focal
Tversky loss.

## BC-breaking (Optional)

Does the modification introduce changes that break the
backward-compatibility of the downstream repos?
If so, please describe how it breaks the compatibility and how the
downstream projects should modify their code to keep compatibility with
this PR.

## Use cases (Optional)

If this PR introduces a new feature, it is better to list some use cases
here, and update the documentation.

## Checklist

1. Pre-commit or other linting tools are used to fix the potential lint
issues.
2. The modification is covered by complete unit tests. If not, please
add more unit test to ensure the correctness.
3. If the modification has potential influence on downstream projects,
this PR should be tested with downstream projects, like MMDet or
MMDet3D.
4. The documentation has been modified accordingly, like docstring or
example tutorials.

Reopening of previous
[PR](https://github.com/open-mmlab/mmsegmentation/pull/2783).
This commit is contained in:
Zifu Wang 2023-05-12 10:32:45 +02:00 committed by GitHub
parent a85675c16f
commit 38900d5c51
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GPG Key ID: 4AEE18F83AFDEB23
2 changed files with 30 additions and 1 deletions

View File

@ -16,6 +16,7 @@ def tversky_loss(pred,
valid_mask,
alpha=0.3,
beta=0.7,
gamma=1.0,
smooth=1,
class_weight=None,
ignore_index=255):
@ -31,6 +32,8 @@ def tversky_loss(pred,
alpha=alpha,
beta=beta,
smooth=smooth)
if gamma > 1.0:
tversky_loss **= (1 / gamma)
if class_weight is not None:
tversky_loss *= class_weight[i]
total_loss += tversky_loss
@ -62,7 +65,11 @@ class TverskyLoss(nn.Module):
"""TverskyLoss. This loss is proposed in `Tversky loss function for image
segmentation using 3D fully convolutional deep networks.
<https://arxiv.org/abs/1706.05721>`_.
<https://arxiv.org/abs/1706.05721>`
and `A novel focal Tversky loss function with improved attention U-Net for
lesion segmentation.
<https://arxiv.org/abs/1810.07842>`_.
Args:
smooth (float): A float number to smooth loss, and avoid NaN error.
Default: 1.
@ -75,6 +82,9 @@ class TverskyLoss(nn.Module):
beta (float, in [0, 1]):
The coefficient of false negatives. Default: 0.7.
Note: alpha + beta = 1.
gamma (float, in [1, inf]): The focal term. When `gamma` > 1,
the loss focuses more on less accurate predictions that
have been misclassified. Default: 1.0.
loss_name (str, optional): Name of the loss item. If you want this loss
item to be included into the backward graph, `loss_` must be the
prefix of the name. Defaults to 'loss_tversky'.
@ -87,6 +97,7 @@ class TverskyLoss(nn.Module):
ignore_index=255,
alpha=0.3,
beta=0.7,
gamma=1.0,
loss_name='loss_tversky'):
super(TverskyLoss, self).__init__()
self.smooth = smooth
@ -94,8 +105,10 @@ class TverskyLoss(nn.Module):
self.loss_weight = loss_weight
self.ignore_index = ignore_index
assert (alpha + beta == 1.0), 'Sum of alpha and beta but be 1.0!'
assert gamma >= 1.0, 'gamma should be at least 1.0!'
self.alpha = alpha
self.beta = beta
self.gamma = gamma
self._loss_name = loss_name
def forward(self, pred, target, **kwargs):
@ -117,6 +130,7 @@ class TverskyLoss(nn.Module):
valid_mask=valid_mask,
alpha=self.alpha,
beta=self.beta,
gamma=self.gamma,
smooth=self.smooth,
class_weight=class_weight,
ignore_index=self.ignore_index)

View File

@ -20,6 +20,21 @@ def test_tversky_lose():
labels = (torch.rand(8, 4, 4) * 3).long()
tversky_loss(logits, labels, ignore_index=1)
# test gamma < 1.0
with pytest.raises(AssertionError):
loss_cfg = dict(
type='TverskyLoss',
class_weight=[1.0, 2.0, 3.0],
loss_weight=1.0,
alpha=0.4,
beta=0.7,
gamma=0.9999,
loss_name='loss_tversky')
tversky_loss = build_loss(loss_cfg)
logits = torch.rand(8, 3, 4, 4)
labels = (torch.rand(8, 4, 4) * 3).long()
tversky_loss(logits, labels, ignore_index=1)
# test tversky loss
loss_cfg = dict(
type='TverskyLoss',