Commit Graph

360 Commits (039ba5d4ca8ba208dd1195899667d6067330a7bd)

Author SHA1 Message Date
谢昕辰 039ba5d4ca
[Feature] Support auto import modules from registry. (#2481)
## Motivation

The registry now supports auto-import modules from the given location.

register_all_modules before running is no longer needed. The modules
will be lazy-imported during building.

- [x] This PR can be merged after
https://github.com/open-mmlab/mmengine/pull/643. The MMEngine version
should be updated.

Ref: https://github.com/open-mmlab/mmdetection/pull/9143
2023-02-23 20:33:17 +08:00
谢昕辰 a947e3e754
[FIx] Set default `backend_args` values to None (#2597)
## Motivation

In MMEngine >= 0.2.0, it might directly determine what the backend is by
using the `data_root` path.

## Modification

Set all default `backend_args` values are `None`.
2023-02-16 15:33:52 +08:00
CSH 2e27f8b678
[Enhancement]Replace numpy ascontiguousarray with torch contiguous to speed-up (#2604)
## Motivation

Original motivation was after [MMDetection PR
#9533](https://github.com/open-mmlab/mmdetection/pull/9533)

With several experiments I found out that if a ndarray is contiguous,
numpy.transpose + torch.contiguous perform better, while if not, then
use numpy.ascontiguousarray + numpy.transpose

## Modification

Replace numpy.ascontiguousarray with torch.contiguous in
[PackSegInputs](https://github.com/open-mmlab/mmsegmentation/blob/1.x/mmseg/datasets/transforms/formatting.py)

Co-authored-by: MeowZheng <meowzheng@outlook.com>
2023-02-15 19:02:00 +08:00
Andrew Lau 49b062e365
CodeCamp #139 [Feature] Support REFUGE dataset. (#2554)
## Motivation 
Add REFUGE datasets
Old PR: https://github.com/open-mmlab/mmsegmentation/pull/2420

---------

Co-authored-by: MengzhangLI <mcmong@pku.edu.cn>
2023-02-03 16:02:19 +08:00
谢昕辰 7ac0888d9f
Bump v1.0.0rc5 (#2549)
as title
2023-02-01 20:34:20 +08:00
zccjjj ce63ccf7ab
Rename typing.py to typing_utils.py (#2548)
## Motivation

Fix the bug in running ```collect_evn.py```. #2547 

## Modification

Rename typing.py to typing_utils.py
2023-02-01 19:11:38 +08:00
谢昕辰 124b87ce90
[Refactor] Refactor fileio (#2543)
## Motivation

Use the new fileio from mmengine
https://github.com/open-mmlab/mmengine/pull/533

## Modification

1. Use `mmengine.fileio` to repalce FileClient  in mmseg/datasets
2. Use `mmengine.fileio` to repalce FileClient in
mmseg/datasets/transforms
3. Use `mmengine.fileio` to repalce FileClient in mmseg/visualization

## BC-breaking (Optional)

we modify all the dataset configurations, so please use the latest config file.
2023-02-01 17:53:22 +08:00
Siddharth Ancha 698dee9525
Backward merge #2535 from `1.x` into `dev-1.x` (#2546)
## Motivation

This is essentially #2535 that I had intended to submit to the `dev-1.x`
branch but accidentally submitted it directly to the `1.x` branch
(apologies!). This also got approved possibly because the core devs also
didn't realize this.

The problem is that now `1.x` and `dev-1.x` are out of sync -- the
changes introduced by #2535 will never be reflected in `dev-1.x`.

## Modification

I'm proposing this "backward-merge" so that `1.x` and `dev-1.x` can be
in sync again. If you look at "files changed", they are exactly the
changes introduced by #2535.

Co-authored-by: MeowZheng <meowzheng@outlook.com>
2023-02-01 10:26:44 +08:00
谢昕辰 18ee41eb7a
Bump v1.0.0rc4 (#2529) 2023-01-30 17:53:07 +08:00
Siddharth Ancha d1c0a3efd4
[Fix] Unfinished label conversion from `-1` to `255` in 1.x (#2516)
## Motivation

This is motivated by a previously unfinished PR (#2332). In that PR, the
label -1 was changed to 255 in `BaseSegDataset`, which is correct.
However, it was changed at only one location. There is another location
in `mmseg/datasets/basesegdataset.py` where -1 was still being used that
was not converted to 255. I have now converted it to 255.

This is exactly same as a similar fix to the `master` branch via #2515 .

## Modification

I've simply converted the snipped

```python
if new_id != -1:
    new_palette.append(palette[old_id])
```
to 
```python
if new_id != 255:
    new_palette.append(palette[old_id])
```

## Checklist

- [x] Pre-commit or other linting tools are used to fix the potential
lint issues.
  - _I've fixed all linting/pre-commit errors._
- [x] The modification is covered by complete unit tests. If not, please
add more unit test to ensure the correctness.
  - _No unit tests need to be added or were affected.
- [x] If the modification has potential influence on downstream
projects, this PR should be tested with downstream projects, like MMDet
or MMDet3D.
  - _I don't think this change affects MMDet or MMDet3D._
- [x] The documentation has been modified accordingly, like docstring or
example tutorials.
- _This change fixes an existing bug and doesn't require modifying any
documentation/docstring._
2023-01-30 12:35:55 +08:00
Siddharth Ancha 74e8b89b17
[Fix] Switch order of `reduce_zero_label` and applying `label_map` in 1.x (#2517)
This is an almost exact duplicate of #2500 (that was made to the
`master` branch) now applied to the `1.x` branch.

---

## Motivation

I want to fix a bug through this PR. The bug occurs when two options --
`reduce_zero_label=True`, and custom classes are used.
`reduce_zero_label` remaps the GT seg labels by remapping the zero-class
to 255 which is ignored. Conceptually, this should occur *before* the
`label_map` is applied, which maps *already reduced labels*. However,
currently, the `label_map` is applied before the zero label is reduced.

## Modification

The modification is simple:
- I've just interchanged the order of the two operations by moving a few
lines from bottom to top.
- I've added a test that passes when the fix is introduced, and fails on
the original `master` branch.

## BC-breaking (Optional)

I do not anticipate this change braking any backward-compatibility.

## Checklist

- [x] Pre-commit or other linting tools are used to fix the potential
lint issues.
  - _I've fixed all linting/pre-commit errors._
- [x] The modification is covered by complete unit tests. If not, please
add more unit test to ensure the correctness.
  - _I've added a unit test._ 
- [x] If the modification has potential influence on downstream
projects, this PR should be tested with downstream projects, like MMDet
or MMDet3D.
  - _I don't think this change affects MMDet or MMDet3D._
- [x] The documentation has been modified accordingly, like docstring or
example tutorials.
- _This change fixes an existing bug and doesn't require modifying any
documentation/docstring._
2023-01-30 12:17:15 +08:00
谢昕辰 37af545f6b
[Fix] Fix inference api and support setting palette to SegLocalVisualizer (#2475)
as title

Co-authored-by: MengzhangLI <mcmong@pku.edu.cn>
2023-01-20 21:40:13 +08:00
Leeinsn 7fc8ca0312
CodeCamp #141 [Feature] Add BioMedical3DRandomFlip. (#2404)
## Motivation

Support for biomedical 3d images augmentation.

## Modification

Add BioMedical3DRandomFlip in mmseg/datasets/transforms/transforms.py.

Co-authored-by: MeowZheng <meowzheng@outlook.com>
2023-01-20 15:34:11 +08:00
Vladimir Loginov 6d8ba3b5a0
Update basesegdataset.py (#2492)
## Motivation

Makes docstring to be consistent with actual argument name.

## Modification

Minor fix

## BC-breaking (Optional)

No
2023-01-17 20:18:46 +08:00
Wencheng Wu 8dae9465a6
[Feature] Add `gt_edge_map` field. (#2466)
## Motivation

The motivation of this PR is to add `gt_edge_map` field to support
boundary loss.

## Modification

- GenerateEdge
Modify `gt_edge` field to `gt_edge_map`.

- PackSegInputs
Add `gt_edge_map` to data_sample.

- stack_batch
Pad `gt_edge_map` to max_shape.

## BC-breaking (Optional)

No

## Use cases (Optional)

Reference `GenerateEdge`.
2023-01-11 11:51:29 +08:00
谢昕辰 f90f7a56d4
[Fix] Fix incorrect `img_shape` value assignment in RandomCrop (#2469)
## Motivation

Fix incorrect `img_shape` value assignment.

## Modification

- mmseg/datasets/transforms/transforms.py
2023-01-10 18:03:43 +08:00
王永韬 2d67e51db3
CodeCamp #140 [New] [Feature] Add synapse dataset and data augmentation in dev-1.x. (#2432)
## Motivation

Add Synapse dataset in MMSegmentation.
Old PR: https://github.com/open-mmlab/mmsegmentation/pull/2372.
2023-01-06 16:14:54 +08:00
legendchilli 6af2b8eab9
[Feature] Add BioMedical3DPad (#2383)
## Motivation
Add the 3d pad transform for biomedical images, which follows the design
of the nnUNet.
2023-01-03 13:37:48 +08:00
Fivethousand 3ca690bad3
[Feature] Add BioMedicalRandomGamma (#2406)
Add the random gamma correction transform for biomedical images, which
follows the design of the nnUNet.
2023-01-02 21:29:03 +08:00
Haoyu Wang 26f3df7a45
[Feature] nnUNet-style Gaussian Noise and Blur (#2373)
## Motivation

implement nnUNet-style Gaussian Noise and Blur
2023-01-02 20:43:15 +08:00
Miao Zheng 6eb1a95a48
Bump 1.0.0rc3 (#2446)
## Motivation

To release 1.0.0rc3  

## Modification

1. Modify mmseg version 
2. Add change log
3. Modify README
4. Modify faq 
5. Revise docker file
2022-12-31 18:15:56 +08:00
Miao Zheng d88f393ffa
[Fix] Remove dependcy mmdet when do not use `MaskFormerHead` and `MMDET_Mask2FormerHead` (#2448)
## Motivation

Calling `mmseg.utils.register_all_modules` will import `MaskFormerHead`
and `Mask2FormerHead`, it will crash if mmdet is not installed as `None`
cannot be initialized.

## Modification

- Modify `MMDET_MaskFormerHead=BaseModule` and `MMDET_Mask2FormerHead =
BaseModule` when cannot import from mmdet
2022-12-31 01:02:58 +08:00
谢昕辰 da4125587e [Refactor] Support TTA (#2184)
* tta init

* use mmcv transform

* test city

* add multiscale

* fix merge

* add softmax to post process

* add ut

* add tta pipeline to other datasets

* remove softmax

* add encoder_decoder_tta ut

* add encoder_decoder_tta ut

* rename

* rename file

* rename config

* rm aug_test

* move flip to post process

* fix channel
2022-12-30 22:52:07 +08:00
Jin Ye 79e8578bfc [Feature] Add Biomedical 3D array random crop transform (#2378)
* [Feature] Add Biomedical 3D array random crop transform

* fix lint

* fix gen crop bbox

* fix gen crop bbox

* docstring

* typo

Co-authored-by: MeowZheng <meowzheng@outlook.com>
2022-12-30 22:52:07 +08:00
Miao Zheng 750bb4f180
Bump 1.0.0rc2 (#2384)
* Bump 1.0.0rc2

* typo
2022-12-06 16:32:52 +08:00
nulam 3bac6ef5a4
Fix typo in warning on binary classification (#2382) 2022-12-06 11:29:11 +08:00
Miao Zheng f3db8d779d
[Fix]Add input argument for datasets (#2379) 2022-12-05 22:27:04 +08:00
谢昕辰 163277bfe0
[Feature] Support Mask2former in MMSeg 1.x (#2255)
* init commits

* fix crop size

* add seg_data2instance_data method

* add ut and update requirement

* update configs and readme

* add model-indel

* update optional requirements

* fix results

* fix lint error

* update results

* update results

* remove mmdet from requirements/optional.txt

* use try import and update README

* add docstring to overwrtied method

* minor change

Co-authored-by: MengzhangLI <mcmong@pku.edu.cn>
2022-12-05 18:34:24 +08:00
MengzhangLI 933e4d3cb6
[Feature] Support MaskFormer(NeurIPS'2021) in MMSeg 1.x (#2215)
* [Feature] Support MaskFormer(NeurIPS'2021) in MMSeg 1.x

* add mmdet try except logic

* refactor config files

* add readme

* fix config

* update models & logs

* add MMDET installation and fix info

* fix comments

* fix

* fix config norm optimizer setting

* update models & logs & unittest

* add docstring of MaskFormerHead

* wait for mmdet 3.0.0rc4

* replace seg_mask with seg_logits & add docstring for batch_input_shape

* use mmdet3.0.0rc4

* fix readme and modify config comments

* add mmdet installation in pr_stage_test.yml

* update mmcv version in pr_stage_test.yml

* add mmdet in build_cpu of pr_stage_test.yml

* modify mmdet& mmcv installation in merge_stage_test.yml

* fix typo

* update test.yml

* update test.yml
2022-12-01 19:03:10 +08:00
谢昕辰 925faea5bf
[Fix] Fix the problem of post-processing not removing padding (#2367)
* add img_padding_size

* minor change

* add pad_shape to data_samples
2022-12-01 16:35:39 +08:00
Miao Zheng 0cdab7297e
Merge pull request #2339 from xiexinch/resize-shortest-edge
[Feature] Add ResizeShortestEdge transform
2022-12-01 16:06:23 +08:00
xiexinch 3b731edbd3 update copyright 2022-12-01 13:58:17 +08:00
xiexinch 5a62b0335f fix h,w order 2022-12-01 11:25:00 +08:00
MengzhangLI e98231ba5f [Enhance] Make scipy as a default dependency in runtime 1.x 2022-11-30 20:11:14 +08:00
xiexinch 721afaec31 add docstring 2022-11-24 16:22:07 +08:00
xiexinch 1910dffd6c minor change 2022-11-24 15:02:50 +08:00
xiexinch 68e3b25560 use mmcv.RandomChoiceResize as entry 2022-11-24 14:55:25 +08:00
xiexinch 721f4d01f3 add ut 2022-11-23 15:15:38 +08:00
MengzhangLI 8b61820751 add comment 2022-11-22 22:42:11 +08:00
xiexinch 056edc8e1a init 2022-11-22 19:51:38 +08:00
MengzhangLI 58e73c3fab [Fix] Fix KNet IterativeDecodeHead bug in dev-1.x branch 2022-11-22 12:46:24 +08:00
MengzhangLI cfab5b39c0 [Fix] Fix ignore class id from -1 to 255 in BaseSegDataset in 1.x 2022-11-22 00:52:36 +08:00
Miao Zheng c56a299571
Merge pull request #2290 from xiexinch/fix_gt_padding
[Enhancement] Support padding in testing
2022-11-19 18:24:59 +08:00
xiexinch 4e12bcd053 fix data sample is None 2022-11-19 18:08:19 +08:00
xiexinch f915df4b0c remove gt padding 2022-11-19 17:38:10 +08:00
MengzhangLI 2d4b113b5d [Fix] Fix typo of BaseSegDataset docstring 2022-11-18 17:20:03 +08:00
xiexinch 26e9729a84 fix swin load statedict 2022-11-15 16:55:49 +08:00
xiexinch d33af5215a fix ut 2022-11-10 18:42:18 +08:00
xiexinch d0b35cdacd fix get gt data 2022-11-10 14:28:20 +08:00
xiexinch 70daaaad59 support padding in test and fix remove gt padding at post_process 2022-11-10 14:21:05 +08:00