Leeinsn
7fc8ca0312
CodeCamp #141 [Feature] Add BioMedical3DRandomFlip. ( #2404 )
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## Motivation
Support for biomedical 3d images augmentation.
## Modification
Add BioMedical3DRandomFlip in mmseg/datasets/transforms/transforms.py.
Co-authored-by: MeowZheng <meowzheng@outlook.com>
2023-01-20 15:34:11 +08:00
Wencheng Wu
8dae9465a6
[Feature] Add gt_edge_map field. ( #2466 )
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## Motivation
The motivation of this PR is to add `gt_edge_map` field to support
boundary loss.
## Modification
- GenerateEdge
Modify `gt_edge` field to `gt_edge_map`.
- PackSegInputs
Add `gt_edge_map` to data_sample.
- stack_batch
Pad `gt_edge_map` to max_shape.
## BC-breaking (Optional)
No
## Use cases (Optional)
Reference `GenerateEdge`.
2023-01-11 11:51:29 +08:00
谢昕辰
f90f7a56d4
[Fix] Fix incorrect img_shape value assignment in RandomCrop ( #2469 )
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## Motivation
Fix incorrect `img_shape` value assignment.
## Modification
- mmseg/datasets/transforms/transforms.py
2023-01-10 18:03:43 +08:00
王永韬
2d67e51db3
CodeCamp #140 [New] [Feature] Add synapse dataset and data augmentation in dev-1.x. ( #2432 )
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## Motivation
Add Synapse dataset in MMSegmentation.
Old PR: https://github.com/open-mmlab/mmsegmentation/pull/2372 .
2023-01-06 16:14:54 +08:00
legendchilli
6af2b8eab9
[Feature] Add BioMedical3DPad ( #2383 )
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## Motivation
Add the 3d pad transform for biomedical images, which follows the design
of the nnUNet.
2023-01-03 13:37:48 +08:00
Fivethousand
3ca690bad3
[Feature] Add BioMedicalRandomGamma ( #2406 )
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Add the random gamma correction transform for biomedical images, which
follows the design of the nnUNet.
2023-01-02 21:29:03 +08:00
Haoyu Wang
26f3df7a45
[Feature] nnUNet-style Gaussian Noise and Blur ( #2373 )
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## Motivation
implement nnUNet-style Gaussian Noise and Blur
2023-01-02 20:43:15 +08:00
Jin Ye
79e8578bfc
[Feature] Add Biomedical 3D array random crop transform ( #2378 )
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* [Feature] Add Biomedical 3D array random crop transform
* fix lint
* fix gen crop bbox
* fix gen crop bbox
* docstring
* typo
Co-authored-by: MeowZheng <meowzheng@outlook.com>
2022-12-30 22:52:07 +08:00
xiexinch
3b731edbd3
update copyright
2022-12-01 13:58:17 +08:00
xiexinch
5a62b0335f
fix h,w order
2022-12-01 11:25:00 +08:00
xiexinch
721afaec31
add docstring
2022-11-24 16:22:07 +08:00
xiexinch
1910dffd6c
minor change
2022-11-24 15:02:50 +08:00
xiexinch
68e3b25560
use mmcv.RandomChoiceResize as entry
2022-11-24 14:55:25 +08:00
xiexinch
721f4d01f3
add ut
2022-11-23 15:15:38 +08:00
xiexinch
056edc8e1a
init
2022-11-22 19:51:38 +08:00
Miao Zheng
ac9ee8c355
[Feature]Generate Edge for dataset ( #2210 )
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* [WIP]Generate Edge for dataset
* add ut
* add repr
* add inti
2022-10-20 16:45:31 +08:00
Miao Zheng
20c7dc689c
[Feature] Add BioMedical data loading ( #2176 )
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* [WIP] Add BioMedical data loading
* add depends nibabel
* fix bug
* fix ut
* fix
* add test data
* xyz2zyx zyx2xyz
* format
* remove ignore empty
* remove ignore empty
* remove with seg in LoadBiomedicalAnnotation
* float32
* docstring
* toxyz
* docstring
2022-10-18 16:30:08 +08:00
MengzhangLI
f3cd44bebf
[Fix] Fix ResizeToMultiple transform in MMSeg 1.x ( #2185 )
2022-10-14 15:37:35 +08:00
Miao Zheng
8de0050f25
[Refactor] data flow ( #1956 )
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* [WIP] Refactor data flow
* model return
* [WIP] Refactor data flow
* support data_samples is optional
* fix benchmark
* fix base
* minors
* rebase
* fix api
* ut
* fix api inference
* comments
* docstring
* docstring
* docstring
* fix bug of slide inference
* add assert c > 1
2022-08-26 15:54:23 +08:00
Miao Zheng
50546da85c
[Fix]Remove modules from mmcv.runner and mmcv.utils ( #1966 )
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* [WIP] mmcv-clean
* [WIP]Remove modules from mmcv.runner and mmcv.utils
* wip
* fix import mmengine
* remove ut
* loadcheckpoint in mae
2022-08-25 15:15:21 +08:00
Miao Zheng
e0499d5a77
[Fix] Fix repo based on refactoring standard ( #1869 )
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* [Fix] Fix repo based on refactory standard
* fix ut
2022-08-19 20:50:02 +08:00
谢昕辰
167f94a70b
rename data to structures ( #1854 )
2022-08-19 20:50:02 +08:00
MengzhangLI
ecab73a892
[Feature] Add P1 DataTransform ( #1843 )
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* [Feature] Add P1 DataTransform
* fix unit test error
* fix @cache_randomness location
2022-08-19 20:50:01 +08:00
谢昕辰
ba4d1d62aa
[Feature] Add LoadImageFromNdArray pipeline ( #1810 )
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* add load image from ndarray pipeline
* fix import
2022-07-22 19:40:00 +08:00
Miao Zheng
4de57b49c5
[Fix] Fix register_all_modules and imports ( #1793 )
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* [Fix] Fix register_all_modules and imports
* fix transforms import
2022-07-21 22:44:42 +08:00
zhengmiao
4b76f277a6
[Refactory] MMSegmentation Content
2022-07-15 15:47:29 +00:00
