Leeinsn
7fc8ca0312
CodeCamp #141 [Feature] Add BioMedical3DRandomFlip. ( #2404 )
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## Motivation
Support for biomedical 3d images augmentation.
## Modification
Add BioMedical3DRandomFlip in mmseg/datasets/transforms/transforms.py.
Co-authored-by: MeowZheng <meowzheng@outlook.com>
2023-01-20 15:34:11 +08:00
Vladimir Loginov
6d8ba3b5a0
Update basesegdataset.py ( #2492 )
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## Motivation
Makes docstring to be consistent with actual argument name.
## Modification
Minor fix
## BC-breaking (Optional)
No
2023-01-17 20:18:46 +08:00
Wencheng Wu
8dae9465a6
[Feature] Add gt_edge_map field. ( #2466 )
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## Motivation
The motivation of this PR is to add `gt_edge_map` field to support
boundary loss.
## Modification
- GenerateEdge
Modify `gt_edge` field to `gt_edge_map`.
- PackSegInputs
Add `gt_edge_map` to data_sample.
- stack_batch
Pad `gt_edge_map` to max_shape.
## BC-breaking (Optional)
No
## Use cases (Optional)
Reference `GenerateEdge`.
2023-01-11 11:51:29 +08:00
谢昕辰
f90f7a56d4
[Fix] Fix incorrect img_shape value assignment in RandomCrop ( #2469 )
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## Motivation
Fix incorrect `img_shape` value assignment.
## Modification
- mmseg/datasets/transforms/transforms.py
2023-01-10 18:03:43 +08:00
王永韬
2d67e51db3
CodeCamp #140 [New] [Feature] Add synapse dataset and data augmentation in dev-1.x. ( #2432 )
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## Motivation
Add Synapse dataset in MMSegmentation.
Old PR: https://github.com/open-mmlab/mmsegmentation/pull/2372 .
2023-01-06 16:14:54 +08:00
legendchilli
6af2b8eab9
[Feature] Add BioMedical3DPad ( #2383 )
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## Motivation
Add the 3d pad transform for biomedical images, which follows the design
of the nnUNet.
2023-01-03 13:37:48 +08:00
Fivethousand
3ca690bad3
[Feature] Add BioMedicalRandomGamma ( #2406 )
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Add the random gamma correction transform for biomedical images, which
follows the design of the nnUNet.
2023-01-02 21:29:03 +08:00
Haoyu Wang
26f3df7a45
[Feature] nnUNet-style Gaussian Noise and Blur ( #2373 )
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## Motivation
implement nnUNet-style Gaussian Noise and Blur
2023-01-02 20:43:15 +08:00
Miao Zheng
6eb1a95a48
Bump 1.0.0rc3 ( #2446 )
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## Motivation
To release 1.0.0rc3
## Modification
1. Modify mmseg version
2. Add change log
3. Modify README
4. Modify faq
5. Revise docker file
2022-12-31 18:15:56 +08:00
Miao Zheng
d88f393ffa
[Fix] Remove dependcy mmdet when do not use MaskFormerHead and MMDET_Mask2FormerHead ( #2448 )
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## Motivation
Calling `mmseg.utils.register_all_modules` will import `MaskFormerHead`
and `Mask2FormerHead`, it will crash if mmdet is not installed as `None`
cannot be initialized.
## Modification
- Modify `MMDET_MaskFormerHead=BaseModule` and `MMDET_Mask2FormerHead =
BaseModule` when cannot import from mmdet
2022-12-31 01:02:58 +08:00
谢昕辰
da4125587e
[Refactor] Support TTA ( #2184 )
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* tta init
* use mmcv transform
* test city
* add multiscale
* fix merge
* add softmax to post process
* add ut
* add tta pipeline to other datasets
* remove softmax
* add encoder_decoder_tta ut
* add encoder_decoder_tta ut
* rename
* rename file
* rename config
* rm aug_test
* move flip to post process
* fix channel
2022-12-30 22:52:07 +08:00
Jin Ye
79e8578bfc
[Feature] Add Biomedical 3D array random crop transform ( #2378 )
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* [Feature] Add Biomedical 3D array random crop transform
* fix lint
* fix gen crop bbox
* fix gen crop bbox
* docstring
* typo
Co-authored-by: MeowZheng <meowzheng@outlook.com>
2022-12-30 22:52:07 +08:00
Miao Zheng
750bb4f180
Bump 1.0.0rc2 ( #2384 )
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* Bump 1.0.0rc2
* typo
2022-12-06 16:32:52 +08:00
nulam
3bac6ef5a4
Fix typo in warning on binary classification ( #2382 )
2022-12-06 11:29:11 +08:00
Miao Zheng
f3db8d779d
[Fix]Add input argument for datasets ( #2379 )
2022-12-05 22:27:04 +08:00
谢昕辰
163277bfe0
[Feature] Support Mask2former in MMSeg 1.x ( #2255 )
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* init commits
* fix crop size
* add seg_data2instance_data method
* add ut and update requirement
* update configs and readme
* add model-indel
* update optional requirements
* fix results
* fix lint error
* update results
* update results
* remove mmdet from requirements/optional.txt
* use try import and update README
* add docstring to overwrtied method
* minor change
Co-authored-by: MengzhangLI <mcmong@pku.edu.cn>
2022-12-05 18:34:24 +08:00
MengzhangLI
933e4d3cb6
[Feature] Support MaskFormer(NeurIPS'2021) in MMSeg 1.x ( #2215 )
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* [Feature] Support MaskFormer(NeurIPS'2021) in MMSeg 1.x
* add mmdet try except logic
* refactor config files
* add readme
* fix config
* update models & logs
* add MMDET installation and fix info
* fix comments
* fix
* fix config norm optimizer setting
* update models & logs & unittest
* add docstring of MaskFormerHead
* wait for mmdet 3.0.0rc4
* replace seg_mask with seg_logits & add docstring for batch_input_shape
* use mmdet3.0.0rc4
* fix readme and modify config comments
* add mmdet installation in pr_stage_test.yml
* update mmcv version in pr_stage_test.yml
* add mmdet in build_cpu of pr_stage_test.yml
* modify mmdet& mmcv installation in merge_stage_test.yml
* fix typo
* update test.yml
* update test.yml
2022-12-01 19:03:10 +08:00
谢昕辰
925faea5bf
[Fix] Fix the problem of post-processing not removing padding ( #2367 )
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* add img_padding_size
* minor change
* add pad_shape to data_samples
2022-12-01 16:35:39 +08:00
Miao Zheng
0cdab7297e
Merge pull request #2339 from xiexinch/resize-shortest-edge
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[Feature] Add ResizeShortestEdge transform
2022-12-01 16:06:23 +08:00
xiexinch
3b731edbd3
update copyright
2022-12-01 13:58:17 +08:00
xiexinch
5a62b0335f
fix h,w order
2022-12-01 11:25:00 +08:00
MengzhangLI
e98231ba5f
[Enhance] Make scipy as a default dependency in runtime 1.x
2022-11-30 20:11:14 +08:00
xiexinch
721afaec31
add docstring
2022-11-24 16:22:07 +08:00
xiexinch
1910dffd6c
minor change
2022-11-24 15:02:50 +08:00
xiexinch
68e3b25560
use mmcv.RandomChoiceResize as entry
2022-11-24 14:55:25 +08:00
xiexinch
721f4d01f3
add ut
2022-11-23 15:15:38 +08:00
MengzhangLI
8b61820751
add comment
2022-11-22 22:42:11 +08:00
xiexinch
056edc8e1a
init
2022-11-22 19:51:38 +08:00
MengzhangLI
58e73c3fab
[Fix] Fix KNet IterativeDecodeHead bug in dev-1.x branch
2022-11-22 12:46:24 +08:00
MengzhangLI
cfab5b39c0
[Fix] Fix ignore class id from -1 to 255 in BaseSegDataset in 1.x
2022-11-22 00:52:36 +08:00
Miao Zheng
c56a299571
Merge pull request #2290 from xiexinch/fix_gt_padding
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[Enhancement] Support padding in testing
2022-11-19 18:24:59 +08:00
xiexinch
4e12bcd053
fix data sample is None
2022-11-19 18:08:19 +08:00
xiexinch
f915df4b0c
remove gt padding
2022-11-19 17:38:10 +08:00
MengzhangLI
2d4b113b5d
[Fix] Fix typo of BaseSegDataset docstring
2022-11-18 17:20:03 +08:00
xiexinch
26e9729a84
fix swin load statedict
2022-11-15 16:55:49 +08:00
xiexinch
d33af5215a
fix ut
2022-11-10 18:42:18 +08:00
xiexinch
d0b35cdacd
fix get gt data
2022-11-10 14:28:20 +08:00
xiexinch
70daaaad59
support padding in test and fix remove gt padding at post_process
2022-11-10 14:21:05 +08:00
MeowZheng
85455100d5
Bump 1.0.0rc1
2022-11-02 16:48:28 +08:00
谢昕辰
2eaf7ee8b3
[Doc] Update inference doc ( #2052 )
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* refactor inference doc
* introduce segdatasample
* add vis example
* fix
* Update docs/en/user_guides/3_inference.md
* update link
Co-authored-by: Miao Zheng <76149310+MeowZheng@users.noreply.github.com>
2022-11-01 21:37:29 +08:00
Miao Zheng
b21df463d4
[Feature] LIP dataset ( #2187 )
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* [WIP] LIP dataset
* wip
* keep473
* lip dataset prepare
* add ut and test data
2022-10-31 20:47:52 +08:00
MengzhangLI
a1f011dc0b
[Doc] Add Data Structures and Elements ( #2070 )
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* [WIP][Doc] Add Data Structures and Elements
* fix
* add
* fix
* add chinses doc
* refactor
* fix
* fix typo
* fix
* fix
* fix typo
* Update docs/en/advanced_guides/structures.md
* Update docs/en/advanced_guides/structures.md
Co-authored-by: Miao Zheng <76149310+MeowZheng@users.noreply.github.com>
2022-10-28 22:22:44 +08:00
Miao Zheng
3d8fd35e26
[Feature]Add Decathlon dataset ( #2227 )
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* [Feature]Add Decathlon dataset
* fix test data
* add file
* remove order
* revise default value for prefix
* modify example
* revise based on comments
* add comments for ut
2022-10-26 20:10:42 +08:00
Miao Zheng
ac9ee8c355
[Feature]Generate Edge for dataset ( #2210 )
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* [WIP]Generate Edge for dataset
* add ut
* add repr
* add inti
2022-10-20 16:45:31 +08:00
Miao Zheng
20c7dc689c
[Feature] Add BioMedical data loading ( #2176 )
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* [WIP] Add BioMedical data loading
* add depends nibabel
* fix bug
* fix ut
* fix
* add test data
* xyz2zyx zyx2xyz
* format
* remove ignore empty
* remove ignore empty
* remove with seg in LoadBiomedicalAnnotation
* float32
* docstring
* toxyz
* docstring
2022-10-18 16:30:08 +08:00
MengzhangLI
f3cd44bebf
[Fix] Fix ResizeToMultiple transform in MMSeg 1.x ( #2185 )
2022-10-14 15:37:35 +08:00
谢昕辰
84e76492b9
mmengine requirement ( #2186 )
2022-10-13 20:43:44 +08:00
谢昕辰
8b392946bb
[Doc] Add evaluation doc ( #2077 )
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* introduction
* add evaluator doc and fix typo
* fix ut
* add test dataflow
* add runner reference
* add dataloader config
* fix typo
* minor change
2022-10-13 14:55:04 +08:00
Miao Zheng
b732fae265
Upgrade pre commit hooks ( #2154 )
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* Upgrade pre commit hooks
* fix lint
2022-10-08 12:04:24 +08:00
Miao Zheng
f87c05308b
[Fix] Fix MMSegmentation colab demo ( #2089 )
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* [WIP] Fix MMSegmentation colab demo
* wip
* fix
* revise config
* seg branch
* colab link
* engine install
* demo image
* remove inference
* fix inference pipeline
* typo
2022-09-30 14:15:39 +08:00
