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Fix samvit bug, add F.sdpa support and ROPE option (#1920) 

* Fix a bug I introduced in samvit, add F.sdpa support and ROPE option to samvit, neck is LayerNorm if not used and standard classifier used

* Add attn dropout to F.sdpa

* Fix fx trace for sam vit

* Fixing torchscript issues in samvit

* Another torchscript fix

* samvit head fc name fix
inception_next
Ross Wightman 2023-08-20 21:22:59 -07:00 committed by GitHub
parent 300f54a96f
commit 3055411c1b
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timm/models/vision_transformer_sam.py
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@ -17,13 +17,15 @@ import torch
import torch.nn as nn
import torch.nn.functional as F
import torch.utils.checkpoint
from torch.jit import Final
from timm.data import IMAGENET_DEFAULT_MEAN, IMAGENET_DEFAULT_STD, IMAGENET_INCEPTION_MEAN, IMAGENET_INCEPTION_STD
from timm.layers import PatchEmbed, Mlp, DropPath, PatchDropout, LayerNorm2d, ClassifierHead, NormMlpClassifierHead,\
Format, resample_abs_pos_embed_nhwc
Format, resample_abs_pos_embed_nhwc, RotaryEmbeddingCat, apply_rot_embed_cat, to_2tuple, use_fused_attn
from ._builder import build_model_with_cfg
from ._manipulate import checkpoint_seq
from ._registry import generate_default_cfgs, register_model
from ._features_fx import register_notrace_function
# model_registry will add each entrypoint fn to this
__all__ = ['VisionTransformerSAM']
@ -32,191 +34,6 @@ __all__ = ['VisionTransformerSAM']
_logger = logging.getLogger(__name__)
class Attention(nn.Module):
def __init__(
self,
dim,
num_heads=8,
qkv_bias=True,
qk_norm=False,
attn_drop=0.,
proj_drop=0.,
norm_layer=nn.LayerNorm,
use_rel_pos: bool = False,
rel_pos_zero_init: bool = True,
input_size: Optional[Tuple[int, int]] = None,
):
super().__init__()
assert dim % num_heads == 0, 'dim should be divisible by num_heads'
self.num_heads = num_heads
self.head_dim = dim // num_heads
self.scale = self.head_dim ** -0.5
self.qkv = nn.Linear(dim, dim * 3, bias=qkv_bias)
self.q_norm = norm_layer(self.head_dim) if qk_norm else nn.Identity()
self.k_norm = norm_layer(self.head_dim) if qk_norm else nn.Identity()
self.attn_drop = nn.Dropout(attn_drop)
self.proj = nn.Linear(dim, dim)
self.proj_drop = nn.Dropout(proj_drop)
self.use_rel_pos = use_rel_pos
if self.use_rel_pos:
assert (
input_size is not None
), "Input size must be provided if using relative positional encoding."
# initialize relative positional embeddings
self.rel_pos_h = nn.Parameter(torch.zeros(
2 * input_size[0] - 1, self.head_dim))
self.rel_pos_w = nn.Parameter(torch.zeros(
2 * input_size[1] - 1, self.head_dim))
def forward(self, x):
B, H, W, _ = x.shape
qkv = self.qkv(x).reshape(
B, H * W, 3, self.num_heads, -1).permute(2, 0, 3, 1, 4)
# qkv with shape (3, B, nHead, H * W, C)
q, k, v = qkv.reshape(3, B * self.num_heads, H * W, -1).unbind(0)
# q, k, v with shape (B * nHead, H * W, C)
q, k = self.q_norm(q), self.k_norm(k)
q = q * self.scale
attn = q @ k.transpose(-2, -1)
if self.use_rel_pos:
attn = add_decomposed_rel_pos(attn, q, self.rel_pos_h, self.rel_pos_w, (H, W), (H, W))
attn = attn.softmax(dim=-1)
attn = self.attn_drop(attn)
x = (attn @ v).view(B, self.num_heads, H, W, -1).permute(0, 2, 3, 1, 4).reshape(B, H, W, -1)
x = self.proj(x)
return x
class LayerScale(nn.Module):
def __init__(self, dim, init_values=1e-5, inplace=False):
super().__init__()
self.inplace = inplace
self.gamma = nn.Parameter(init_values * torch.ones(dim))
def forward(self, x):
return x.mul_(self.gamma) if self.inplace else x * self.gamma
class Block(nn.Module):
def __init__(
self,
dim,
num_heads,
mlp_ratio=4.,
qkv_bias=True,
qk_norm=False,
proj_drop=0.,
attn_drop=0.,
init_values=None,
drop_path=0.,
act_layer=nn.GELU,
norm_layer=nn.LayerNorm,
mlp_layer=Mlp,
use_rel_pos=False,
window_size=0,
input_size=None,
):
super().__init__()
self.window_size = window_size
self.norm1 = norm_layer(dim)
self.attn = Attention(
dim,
num_heads=num_heads,
qkv_bias=qkv_bias,
qk_norm=qk_norm,
attn_drop=attn_drop,
proj_drop=proj_drop,
norm_layer=norm_layer,
use_rel_pos=use_rel_pos,
input_size=input_size if window_size == 0 else (window_size, window_size),
)
self.ls1 = LayerScale(dim, init_values=init_values) if init_values else nn.Identity()
self.drop_path1 = DropPath(drop_path) if drop_path > 0. else nn.Identity()
self.norm2 = norm_layer(dim)
self.mlp = mlp_layer(
in_features=dim,
hidden_features=int(dim * mlp_ratio),
act_layer=act_layer,
drop=proj_drop,
)
self.ls2 = LayerScale(dim, init_values=init_values) if init_values else nn.Identity()
self.drop_path2 = DropPath(drop_path) if drop_path > 0. else nn.Identity()
def forward(self, x):
shortcut = x
x = self.norm1(x)
# Window partition
if self.window_size > 0:
H, W = x.shape[1], x.shape[2]
x, pad_hw = window_partition(x, self.window_size)
x = self.drop_path1(self.ls1(self.attn(x)))
# Reverse window partition
if self.window_size > 0:
x = window_unpartition(x, self.window_size, pad_hw, (H, W))
x = shortcut + x
x = x + self.drop_path2(self.ls2(self.mlp(self.norm2(x))))
return x
def window_partition(x: torch.Tensor, window_size: int) -> Tuple[torch.Tensor, Tuple[int, int]]:
"""
Partition into non-overlapping windows with padding if needed.
Args:
x (tensor): input tokens with [B, H, W, C].
window_size (int): window size.
Returns:
windows: windows after partition with [B * num_windows, window_size, window_size, C].
(Hp, Wp): padded height and width before partition
"""
B, H, W, C = x.shape
pad_h = (window_size - H % window_size) % window_size
pad_w = (window_size - W % window_size) % window_size
if pad_h > 0 or pad_w > 0:
x = F.pad(x, (0, 0, 0, pad_w, 0, pad_h))
Hp, Wp = H + pad_h, W + pad_w
x = x.view(B, Hp // window_size, window_size, Wp // window_size, window_size, C)
windows = x.permute(0, 1, 3, 2, 4, 5).contiguous().view(-1, window_size, window_size, C)
return windows, (Hp, Wp)
def window_unpartition(
windows: torch.Tensor, window_size: int, pad_hw: Tuple[int, int], hw: Tuple[int, int]
) -> torch.Tensor:
"""
Window unpartition into original sequences and removing padding.
Args:
windows (tensor): input tokens with [B * num_windows, window_size, window_size, C].
window_size (int): window size.
pad_hw (Tuple): padded height and width (Hp, Wp).
hw (Tuple): original height and width (H, W) before padding.
Returns:
x: unpartitioned sequences with [B, H, W, C].
"""
Hp, Wp = pad_hw
H, W = hw
B = windows.shape[0] // (Hp * Wp // window_size // window_size)
x = windows.view(B, Hp // window_size, Wp // window_size, window_size, window_size, -1)
x = x.permute(0, 1, 3, 2, 4, 5).contiguous().view(B, Hp, Wp, -1)
if Hp > H or Wp > W:
x = x[:, :H, :W, :].contiguous()
return x
def get_rel_pos(q_size: int, k_size: int, rel_pos: torch.Tensor) -> torch.Tensor:
"""
Get relative positional embeddings according to the relative positions of
@ -249,9 +66,10 @@ def get_rel_pos(q_size: int, k_size: int, rel_pos: torch.Tensor) -> torch.Tensor
return rel_pos_resized[relative_coords.long()]
register_notrace_function(get_rel_pos)
def add_decomposed_rel_pos(
attn: torch.Tensor,
def get_decomposed_rel_pos_bias(
q: torch.Tensor,
rel_pos_h: torch.Tensor,
rel_pos_w: torch.Tensor,
@ -262,7 +80,6 @@ def add_decomposed_rel_pos(
Calculate decomposed Relative Positional Embeddings from :paper:`mvitv2`.
https://github.com/facebookresearch/mvit/blob/19786631e330df9f3622e5402b4a419a263a2c80/mvit/models/attention.py
Args:
attn (Tensor): attention map.
q (Tensor): query q in the attention layer with shape (B, q_h * q_w, C).
rel_pos_h (Tensor): relative position embeddings (Lh, C) for height axis.
rel_pos_w (Tensor): relative position embeddings (Lw, C) for width axis.
@ -270,7 +87,7 @@ def add_decomposed_rel_pos(
k_size (Tuple): spatial sequence size of key k with (k_h, k_w).
Returns:
attn (Tensor): attention map with added relative positional embeddings.
bias (Tensor): attention bias to add to attention map
"""
q_h, q_w = q_size
k_h, k_w = k_size
@ -282,12 +99,220 @@ def add_decomposed_rel_pos(
rel_h = torch.einsum("bhwc,hkc->bhwk", r_q, Rh)
rel_w = torch.einsum("bhwc,wkc->bhwk", r_q, Rw)
attn = (
attn.view(B, q_h, q_w, k_h, k_w) +
rel_h[:, :, :, :, None] + rel_w[:, :, :, None, :]
).view(B, q_h * q_w, k_h * k_w)
attn_bias = rel_h[:, :, :, :, None] + rel_w[:, :, :, None, :]
return attn_bias.reshape(-1, q_h * q_w, k_h * k_w)
return attn
class Attention(nn.Module):
fused_attn: Final[bool]
def __init__(
self,
dim,
num_heads=8,
qkv_bias=True,
qk_norm=False,
attn_drop=0.,
proj_drop=0.,
norm_layer=nn.LayerNorm,
use_rel_pos: bool = False,
input_size: Optional[Tuple[int, int]] = None,
rope: Optional[nn.Module] = None,
):
super().__init__()
assert dim % num_heads == 0, 'dim should be divisible by num_heads'
self.num_heads = num_heads
self.head_dim = dim // num_heads
self.scale = self.head_dim ** -0.5
self.fused_attn = use_fused_attn()
self.qkv = nn.Linear(dim, dim * 3, bias=qkv_bias)
self.q_norm = norm_layer(self.head_dim) if qk_norm else nn.Identity()
self.k_norm = norm_layer(self.head_dim) if qk_norm else nn.Identity()
self.attn_drop = nn.Dropout(attn_drop)
self.proj = nn.Linear(dim, dim)
self.proj_drop = nn.Dropout(proj_drop)
self.use_rel_pos = use_rel_pos
if self.use_rel_pos:
assert rope is None
assert (
input_size is not None
), "Input size must be provided if using relative positional encoding."
# initialize relative positional embeddings
self.rel_pos_h = nn.Parameter(torch.zeros(
2 * input_size[0] - 1, self.head_dim))
self.rel_pos_w = nn.Parameter(torch.zeros(
2 * input_size[1] - 1, self.head_dim))
self.rope = rope
def forward(self, x):
B, H, W, _ = x.shape
N = H * W
x = x.reshape(B, N, -1)
qkv = self.qkv(x).view(B, N, 3, self.num_heads, -1).permute(2, 0, 3, 1, 4)
# qkv with shape (3, B, nHead, H * W, C)
q, k, v = qkv.reshape(3, B * self.num_heads, N, -1).unbind(0)
# q, k, v with shape (B * nHead, H * W, C)
q, k = self.q_norm(q), self.k_norm(k)
if self.use_rel_pos:
attn_bias = get_decomposed_rel_pos_bias(q, self.rel_pos_h, self.rel_pos_w, (H, W), (H, W))
else:
attn_bias = None
if self.rope is not None:
rope = self.rope.get_embed()
q = apply_rot_embed_cat(q, rope).type_as(v)
k = apply_rot_embed_cat(k, rope).type_as(v)
if self.fused_attn:
x = torch.nn.functional.scaled_dot_product_attention(
q, k, v,
attn_mask=attn_bias,
dropout_p=self.attn_drop.p,
)
else:
q = q * self.scale
attn = q @ k.transpose(-2, -1)
if attn_bias is not None:
attn = attn + attn_bias
attn = attn.softmax(dim=-1)
attn = self.attn_drop(attn)
x = attn @ v
x = x.view(B, self.num_heads, N, -1).transpose(1, 2).reshape(B, N, -1)
x = self.proj(x)
x = x.view(B, H, W, -1)
return x
class LayerScale(nn.Module):
def __init__(self, dim, init_values=1e-5, inplace=False):
super().__init__()
self.inplace = inplace
self.gamma = nn.Parameter(init_values * torch.ones(dim))
def forward(self, x):
return x.mul_(self.gamma) if self.inplace else x * self.gamma
class Block(nn.Module):
def __init__(
self,
dim,
num_heads,
mlp_ratio=4.,
qkv_bias=True,
qk_norm=False,
proj_drop=0.,
attn_drop=0.,
init_values=None,
drop_path=0.,
act_layer=nn.GELU,
norm_layer=nn.LayerNorm,
mlp_layer=Mlp,
use_rel_pos=False,
window_size=0,
input_size=None,
rope=None,
):
super().__init__()
self.window_size = window_size
self.norm1 = norm_layer(dim)
self.attn = Attention(
dim,
num_heads=num_heads,
qkv_bias=qkv_bias,
qk_norm=qk_norm,
attn_drop=attn_drop,
proj_drop=proj_drop,
norm_layer=norm_layer,
use_rel_pos=use_rel_pos,
input_size=input_size if window_size == 0 else (window_size, window_size),
rope=rope,
)
self.ls1 = LayerScale(dim, init_values=init_values) if init_values else nn.Identity()
self.drop_path1 = DropPath(drop_path) if drop_path > 0. else nn.Identity()
self.norm2 = norm_layer(dim)
self.mlp = mlp_layer(
in_features=dim,
hidden_features=int(dim * mlp_ratio),
act_layer=act_layer,
drop=proj_drop,
)
self.ls2 = LayerScale(dim, init_values=init_values) if init_values else nn.Identity()
self.drop_path2 = DropPath(drop_path) if drop_path > 0. else nn.Identity()
def forward(self, x):
B, H, W, _ = x.shape
shortcut = x
x = self.norm1(x)
# Window partition
pad_hw: Optional[Tuple[int, int]] = None
if self.window_size > 0:
x, pad_hw = window_partition(x, self.window_size)
x = self.drop_path1(self.ls1(self.attn(x)))
# Reverse window partition
if self.window_size > 0:
x = window_unpartition(x, self.window_size, (H, W), pad_hw)
x = shortcut + x
x = x.reshape(B, H * W, -1) # MLP is faster for N, L, C tensor
x = x + self.drop_path2(self.ls2(self.mlp(self.norm2(x))))
x = x.reshape(B, H, W, -1)
return x
def window_partition(x: torch.Tensor, window_size: int) -> Tuple[torch.Tensor, Tuple[int, int]]:
"""
Partition into non-overlapping windows with padding if needed.
Args:
x (tensor): input tokens with [B, H, W, C].
window_size (int): window size.
Returns:
windows: windows after partition with [B * num_windows, window_size, window_size, C].
(Hp, Wp): padded height and width before partition
"""
B, H, W, C = x.shape
pad_h = (window_size - H % window_size) % window_size
pad_w = (window_size - W % window_size) % window_size
x = F.pad(x, (0, 0, 0, pad_w, 0, pad_h))
Hp, Wp = H + pad_h, W + pad_w
x = x.view(B, Hp // window_size, window_size, Wp // window_size, window_size, C)
windows = x.permute(0, 1, 3, 2, 4, 5).contiguous().view(-1, window_size, window_size, C)
return windows, (Hp, Wp)
def window_unpartition(
windows: torch.Tensor, window_size: int, hw: Tuple[int, int], pad_hw: Optional[Tuple[int, int]] = None,
) -> torch.Tensor:
"""
Window unpartition into original sequences and removing padding.
Args:
windows (tensor): input tokens with [B * num_windows, window_size, window_size, C].
window_size (int): window size.
pad_hw (Tuple): padded height and width (Hp, Wp).
hw (Tuple): original height and width (H, W) before padding.
Returns:
x: unpartitioned sequences with [B, H, W, C].
"""
Hp, Wp = pad_hw if pad_hw is not None else hw
H, W = hw
B = windows.shape[0] // (Hp * Wp // window_size // window_size)
x = windows.view(B, Hp // window_size, Wp // window_size, window_size, window_size, -1)
x = x.permute(0, 1, 3, 2, 4, 5).contiguous().view(B, Hp, Wp, -1)
x = x[:, :H, :W, :].contiguous()
return x
class VisionTransformerSAM(nn.Module):
@ -326,11 +351,13 @@ class VisionTransformerSAM(nn.Module):
mlp_layer: Callable = Mlp,
use_abs_pos: bool = True,
use_rel_pos: bool = False,
use_rope: bool = False,
window_size: int = 14,
global_attn_indexes: Tuple[int, ...] = (),
neck_chans: int = 256,
global_pool: str = 'avg',
head_hidden_size: Optional[int] = None
head_hidden_size: Optional[int] = None,
ref_feat_shape: Optional[Tuple[Tuple[int, int], Tuple[int, int]]] = None
):
"""
Args:
@ -356,10 +383,12 @@ class VisionTransformerSAM(nn.Module):
block_fn: Transformer block layer.
use_abs_pos: If True, use absolute positional embeddings.
use_rel_pos: If True, add relative positional embeddings to the attention map.
use_rope: If True, add rotary position embeddings to q/k in attention block.
window_size: Window size for window attention blocks. If 0, not use window attention.
global_attn_indexes: Indexes for blocks using global attention. Used when window_size > 0.
global_pool: Global pooling type.
head_hidden_size: If set, use NormMlpHead
ref_feat_shape: Tuple of reference feature shapes for ROPE, (global, local)
"""
super().__init__()
norm_layer = norm_layer or partial(nn.LayerNorm, eps=1e-6)
@ -394,6 +423,30 @@ class VisionTransformerSAM(nn.Module):
self.patch_drop = nn.Identity()
self.norm_pre = norm_layer(embed_dim) if pre_norm else nn.Identity()
if use_rope:
assert not use_rel_pos, "ROPE and relative pos embeddings should not be enabled at same time"
if ref_feat_shape is not None:
assert len(ref_feat_shape) == 2
ref_feat_shape_global = to_2tuple(ref_feat_shape[0])
ref_feat_shape_window = to_2tuple(ref_feat_shape[1])
else:
ref_feat_shape_global = ref_feat_shape_window = None
self.rope_global = RotaryEmbeddingCat(
embed_dim // num_heads,
in_pixels=False,
feat_shape=grid_size,
ref_feat_shape=ref_feat_shape_global,
)
self.rope_window = RotaryEmbeddingCat(
embed_dim // num_heads,
in_pixels=False,
feat_shape=to_2tuple(window_size),
ref_feat_shape=ref_feat_shape_window,
)
else:
self.rope_global = None
self.rope_window = None
# stochastic depth decay rule
dpr = [x.item() for x in torch.linspace(0, drop_path_rate, depth)]
self.blocks = nn.Sequential(*[
@ -413,6 +466,7 @@ class VisionTransformerSAM(nn.Module):
use_rel_pos=use_rel_pos,
window_size=window_size if i not in global_attn_indexes else 0,
input_size=grid_size,
rope=self.rope_window if i not in global_attn_indexes else self.rope_global,
)
for i in range(depth)])
@ -436,7 +490,11 @@ class VisionTransformerSAM(nn.Module):
)
self.num_features = neck_chans
else:
self.neck = nn.Identity()
if head_hidden_size:
self.neck = nn.Identity()
else:
# should have a final norm with standard ClassifierHead
self.neck = LayerNorm2d(embed_dim)
neck_chans = embed_dim
# Classifier Head
@ -526,7 +584,7 @@ def _cfg(url='', **kwargs):
'num_classes': 1000, 'input_size': (3, 1024, 1024), 'pool_size': None,
'crop_pct': .9, 'interpolation': 'bicubic', 'fixed_input_size': True,
'mean': IMAGENET_INCEPTION_MEAN, 'std': IMAGENET_INCEPTION_STD,
'first_conv': 'patch_embed.proj', 'classifier': 'head',
'first_conv': 'patch_embed.proj', 'classifier': 'head.fc',
**kwargs
}
@ -552,6 +610,10 @@ default_cfgs = generate_default_cfgs({
license='apache-2.0',
mean=IMAGENET_DEFAULT_MEAN, std=IMAGENET_DEFAULT_STD, num_classes=0,
input_size=(3, 1024, 1024), crop_pct=1.0),
'samvit_base_patch16_224': _cfg(
mean=IMAGENET_DEFAULT_MEAN, std=IMAGENET_DEFAULT_STD, num_classes=1000,
input_size=(3, 224, 224), crop_pct=0.9),
})
@ -606,3 +668,17 @@ def samvit_huge_patch16(pretrained=False, **kwargs) -> VisionTransformerSAM:
model = _create_vision_transformer(
'samvit_huge_patch16', pretrained=pretrained, **dict(model_args, **kwargs))
return model
@register_model
def samvit_base_patch16_224(pretrained=False, **kwargs) -> VisionTransformerSAM:
""" ViT-B/16 based on samvit arch
"""
model_args = dict(
patch_size=16, embed_dim=768, depth=12, num_heads=12, global_attn_indexes=[2, 5, 8, 11],
window_size=14, use_rel_pos=True, use_abs_pos=False, img_size=224, neck_chans=None,
)
model = _create_vision_transformer(
'samvit_base_patch16_224', pretrained=pretrained, **dict(model_args, **kwargs))
return model