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Code Issues Projects Releases Wiki Activity

Utils reorganization (#1392)

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* Utils reorganization

* Add new utils files

* cleanup

* simplify

* reduce datasets.py

* remove evolve.sh

* loadWebcam cleanup
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Glenn Jocher 2020-11-14 11:50:32 +01:00 committed by GitHub
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14 changed files with 890 additions and 988 deletions
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12
detect.py
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@ -10,14 +10,15 @@ from numpy import random
from models.experimental import attempt_load
from utils.datasets import LoadStreams, LoadImages
from utils.general import check_img_size, non_max_suppression, apply_classifier, scale_coords, xyxy2xywh, \
plot_one_box, strip_optimizer, set_logging, increment_path
strip_optimizer, set_logging, increment_path
from utils.plots import plot_one_box
from utils.torch_utils import select_device, load_classifier, time_synchronized
def detect(save_img=False):
source, weights, view_img, save_txt, imgsz = opt.source, opt.weights, opt.view_img, opt.save_txt, opt.img_size
webcam = source.isnumeric() or source.endswith('.txt') or \
source.lower().startswith(('rtsp://', 'rtmp://', 'http://'))
webcam = source.isnumeric() or source.endswith('.txt') or source.lower().startswith(
('rtsp://', 'rtmp://', 'http://'))
# Directories
save_dir = Path(increment_path(Path(opt.project) / opt.name, exist_ok=opt.exist_ok)) # increment run
@ -38,8 +39,7 @@ def detect(save_img=False):
classify = False
if classify:
modelc = load_classifier(name='resnet101', n=2) # initialize
modelc.load_state_dict(torch.load('weights/resnet101.pt', map_location=device)['model']) # load weights
modelc.to(device).eval()
modelc.load_state_dict(torch.load('weights/resnet101.pt', map_location=device)['model']).to(device).eval()
# Set Dataloader
vid_path, vid_writer = None, None
@ -53,7 +53,7 @@ def detect(save_img=False):
# Get names and colors
names = model.module.names if hasattr(model, 'module') else model.names
colors = [[random.randint(0, 255) for _ in range(3)] for _ in range(len(names))]
colors = [[random.randint(0, 255) for _ in range(3)] for _ in names]
# Run inference
t0 = time.time()

14
models/yolo.py
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@ -13,10 +13,16 @@ import torch.nn as nn
from models.common import Conv, Bottleneck, SPP, DWConv, Focus, BottleneckCSP, Concat, NMS, autoShape
from models.experimental import MixConv2d, CrossConv, C3
from utils.general import check_anchor_order, make_divisible, check_file, set_logging
from utils.autoanchor import check_anchor_order
from utils.general import make_divisible, check_file, set_logging
from utils.torch_utils import time_synchronized, fuse_conv_and_bn, model_info, scale_img, initialize_weights, \
select_device, copy_attr
try:
import thop # for FLOPS computation
except ImportError:
thop = None
class Detect(nn.Module):
stride = None # strides computed during build
@ -121,11 +127,7 @@ class Model(nn.Module):
x = y[m.f] if isinstance(m.f, int) else [x if j == -1 else y[j] for j in m.f] # from earlier layers
if profile:
try:
import thop
o = thop.profile(m, inputs=(x,), verbose=False)[0] / 1E9 * 2 # FLOPS
except:
o = 0
o = thop.profile(m, inputs=(x,), verbose=False)[0] / 1E9 * 2 if thop else 0 # FLOPS
t = time_synchronized()
for _ in range(10):
_ = m(x)

8
test.py
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@ -11,9 +11,11 @@ from tqdm import tqdm
from models.experimental import attempt_load
from utils.datasets import create_dataloader
from utils.general import coco80_to_coco91_class, check_dataset, check_file, check_img_size, compute_loss, \
non_max_suppression, scale_coords, xyxy2xywh, clip_coords, plot_images, xywh2xyxy, box_iou, output_to_target, \
ap_per_class, set_logging, increment_path
from utils.general import coco80_to_coco91_class, check_dataset, check_file, check_img_size, box_iou, \
non_max_suppression, scale_coords, xyxy2xywh, xywh2xyxy, clip_coords, set_logging, increment_path
from utils.loss import compute_loss
from utils.metrics import ap_per_class
from utils.plots import plot_images, output_to_target
from utils.torch_utils import select_device, time_synchronized

19
train.py
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@ -3,7 +3,6 @@ import logging
import math
import os
import random
import shutil
import time
from pathlib import Path
from warnings import warn
@ -23,13 +22,15 @@ from tqdm import tqdm
import test # import test.py to get mAP after each epoch
from models.yolo import Model
from utils.autoanchor import check_anchors
from utils.datasets import create_dataloader
from utils.general import (
torch_distributed_zero_first, labels_to_class_weights, plot_labels, check_anchors, labels_to_image_weights,
compute_loss, plot_images, fitness, strip_optimizer, plot_results, get_latest_run, check_dataset, check_file,
check_git_status, check_img_size, increment_path, print_mutation, plot_evolution, set_logging, init_seeds)
from utils.general import labels_to_class_weights, increment_path, labels_to_image_weights, init_seeds, \
fitness, strip_optimizer, get_latest_run, check_dataset, check_file, check_git_status, check_img_size, \
print_mutation, set_logging
from utils.google_utils import attempt_download
from utils.torch_utils import ModelEMA, select_device, intersect_dicts
from utils.loss import compute_loss
from utils.plots import plot_images, plot_labels, plot_results, plot_evolution
from utils.torch_utils import ModelEMA, select_device, intersect_dicts, torch_distributed_zero_first
logger = logging.getLogger(__name__)
@ -209,7 +210,7 @@ def train(hyp, opt, device, tb_writer=None, wandb=None):
# Start training
t0 = time.time()
nw = max(round(hyp['warmup_epochs'] * nb), 1e3) # number of warmup iterations, max(3 epochs, 1k iterations)
nw = max(round(hyp['warmup_epochs'] * nb), 1000) # number of warmup iterations, max(3 epochs, 1k iterations)
# nw = min(nw, (epochs - start_epoch) / 2 * nb) # limit warmup to < 1/2 of training
maps = np.zeros(nc) # mAP per class
results = (0, 0, 0, 0, 0, 0, 0) # P, R, mAP@.5, mAP@.5-.95, val_loss(box, obj, cls)
@ -334,9 +335,9 @@ def train(hyp, opt, device, tb_writer=None, wandb=None):
os.system('gsutil cp %s gs://%s/results/results%s.txt' % (results_file, opt.bucket, opt.name))
# Log
tags = ['train/giou_loss', 'train/obj_loss', 'train/cls_loss', # train loss
tags = ['train/box_loss', 'train/obj_loss', 'train/cls_loss', # train loss
'metrics/precision', 'metrics/recall', 'metrics/mAP_0.5', 'metrics/mAP_0.5:0.95',
'val/giou_loss', 'val/obj_loss', 'val/cls_loss', # val loss
'val/box_loss', 'val/obj_loss', 'val/cls_loss', # val loss
'x/lr0', 'x/lr1', 'x/lr2'] # params
for x, tag in zip(list(mloss[:-1]) + list(results) + lr, tags):
if tb_writer:

2
utils/activations.py
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@ -1,3 +1,5 @@
# Activation functions
import torch
import torch.nn as nn
import torch.nn.functional as F

152
utils/autoanchor.py Normal file
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@ -0,0 +1,152 @@
# Auto-anchor utils
import numpy as np
import torch
import yaml
from scipy.cluster.vq import kmeans
from tqdm import tqdm
def check_anchor_order(m):
# Check anchor order against stride order for YOLOv5 Detect() module m, and correct if necessary
a = m.anchor_grid.prod(-1).view(-1) # anchor area
da = a[-1] - a[0] # delta a
ds = m.stride[-1] - m.stride[0] # delta s
if da.sign() != ds.sign(): # same order
print('Reversing anchor order')
m.anchors[:] = m.anchors.flip(0)
m.anchor_grid[:] = m.anchor_grid.flip(0)
def check_anchors(dataset, model, thr=4.0, imgsz=640):
# Check anchor fit to data, recompute if necessary
print('\nAnalyzing anchors... ', end='')
m = model.module.model[-1] if hasattr(model, 'module') else model.model[-1] # Detect()
shapes = imgsz * dataset.shapes / dataset.shapes.max(1, keepdims=True)
scale = np.random.uniform(0.9, 1.1, size=(shapes.shape[0], 1)) # augment scale
wh = torch.tensor(np.concatenate([l[:, 3:5] * s for s, l in zip(shapes * scale, dataset.labels)])).float() # wh
def metric(k): # compute metric
r = wh[:, None] / k[None]
x = torch.min(r, 1. / r).min(2)[0] # ratio metric
best = x.max(1)[0] # best_x
aat = (x > 1. / thr).float().sum(1).mean() # anchors above threshold
bpr = (best > 1. / thr).float().mean() # best possible recall
return bpr, aat
bpr, aat = metric(m.anchor_grid.clone().cpu().view(-1, 2))
print('anchors/target = %.2f, Best Possible Recall (BPR) = %.4f' % (aat, bpr), end='')
if bpr < 0.98: # threshold to recompute
print('. Attempting to improve anchors, please wait...')
na = m.anchor_grid.numel() // 2 # number of anchors
new_anchors = kmean_anchors(dataset, n=na, img_size=imgsz, thr=thr, gen=1000, verbose=False)
new_bpr = metric(new_anchors.reshape(-1, 2))[0]
if new_bpr > bpr: # replace anchors
new_anchors = torch.tensor(new_anchors, device=m.anchors.device).type_as(m.anchors)
m.anchor_grid[:] = new_anchors.clone().view_as(m.anchor_grid) # for inference
m.anchors[:] = new_anchors.clone().view_as(m.anchors) / m.stride.to(m.anchors.device).view(-1, 1, 1) # loss
check_anchor_order(m)
print('New anchors saved to model. Update model *.yaml to use these anchors in the future.')
else:
print('Original anchors better than new anchors. Proceeding with original anchors.')
print('') # newline
def kmean_anchors(path='./data/coco128.yaml', n=9, img_size=640, thr=4.0, gen=1000, verbose=True):
""" Creates kmeans-evolved anchors from training dataset
Arguments:
path: path to dataset *.yaml, or a loaded dataset
n: number of anchors
img_size: image size used for training
thr: anchor-label wh ratio threshold hyperparameter hyp['anchor_t'] used for training, default=4.0
gen: generations to evolve anchors using genetic algorithm
verbose: print all results
Return:
k: kmeans evolved anchors
Usage:
from utils.general import *; _ = kmean_anchors()
"""
thr = 1. / thr
def metric(k, wh): # compute metrics
r = wh[:, None] / k[None]
x = torch.min(r, 1. / r).min(2)[0] # ratio metric
# x = wh_iou(wh, torch.tensor(k)) # iou metric
return x, x.max(1)[0] # x, best_x
def anchor_fitness(k): # mutation fitness
_, best = metric(torch.tensor(k, dtype=torch.float32), wh)
return (best * (best > thr).float()).mean() # fitness
def print_results(k):
k = k[np.argsort(k.prod(1))] # sort small to large
x, best = metric(k, wh0)
bpr, aat = (best > thr).float().mean(), (x > thr).float().mean() * n # best possible recall, anch > thr
print('thr=%.2f: %.4f best possible recall, %.2f anchors past thr' % (thr, bpr, aat))
print('n=%g, img_size=%s, metric_all=%.3f/%.3f-mean/best, past_thr=%.3f-mean: ' %
(n, img_size, x.mean(), best.mean(), x[x > thr].mean()), end='')
for i, x in enumerate(k):
print('%i,%i' % (round(x[0]), round(x[1])), end=', ' if i < len(k) - 1 else '\n') # use in *.cfg
return k
if isinstance(path, str): # *.yaml file
with open(path) as f:
data_dict = yaml.load(f, Loader=yaml.FullLoader) # model dict
from utils.datasets import LoadImagesAndLabels
dataset = LoadImagesAndLabels(data_dict['train'], augment=True, rect=True)
else:
dataset = path # dataset
# Get label wh
shapes = img_size * dataset.shapes / dataset.shapes.max(1, keepdims=True)
wh0 = np.concatenate([l[:, 3:5] * s for s, l in zip(shapes, dataset.labels)]) # wh
# Filter
i = (wh0 < 3.0).any(1).sum()
if i:
print('WARNING: Extremely small objects found. '
'%g of %g labels are < 3 pixels in width or height.' % (i, len(wh0)))
wh = wh0[(wh0 >= 2.0).any(1)] # filter > 2 pixels
# Kmeans calculation
print('Running kmeans for %g anchors on %g points...' % (n, len(wh)))
s = wh.std(0) # sigmas for whitening
k, dist = kmeans(wh / s, n, iter=30) # points, mean distance
k *= s
wh = torch.tensor(wh, dtype=torch.float32) # filtered
wh0 = torch.tensor(wh0, dtype=torch.float32) # unfiltered
k = print_results(k)
# Plot
# k, d = [None] * 20, [None] * 20
# for i in tqdm(range(1, 21)):
# k[i-1], d[i-1] = kmeans(wh / s, i) # points, mean distance
# fig, ax = plt.subplots(1, 2, figsize=(14, 7))
# ax = ax.ravel()
# ax[0].plot(np.arange(1, 21), np.array(d) ** 2, marker='.')
# fig, ax = plt.subplots(1, 2, figsize=(14, 7)) # plot wh
# ax[0].hist(wh[wh[:, 0]<100, 0],400)
# ax[1].hist(wh[wh[:, 1]<100, 1],400)
# fig.tight_layout()
# fig.savefig('wh.png', dpi=200)
# Evolve
npr = np.random
f, sh, mp, s = anchor_fitness(k), k.shape, 0.9, 0.1 # fitness, generations, mutation prob, sigma
pbar = tqdm(range(gen), desc='Evolving anchors with Genetic Algorithm') # progress bar
for _ in pbar:
v = np.ones(sh)
while (v == 1).all(): # mutate until a change occurs (prevent duplicates)
v = ((npr.random(sh) < mp) * npr.random() * npr.randn(*sh) * s + 1).clip(0.3, 3.0)
kg = (k.copy() * v).clip(min=2.0)
fg = anchor_fitness(kg)
if fg > f:
f, k = fg, kg.copy()
pbar.desc = 'Evolving anchors with Genetic Algorithm: fitness = %.4f' % f
if verbose:
print_results(k)
return print_results(k)

75
utils/datasets.py
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@ -1,3 +1,5 @@
# Dataset utils and dataloaders
import glob
import math
import os
@ -16,8 +18,10 @@ from PIL import Image, ExifTags
from torch.utils.data import Dataset
from tqdm import tqdm
from utils.general import xyxy2xywh, xywh2xyxy, torch_distributed_zero_first
from utils.general import xyxy2xywh, xywh2xyxy
from utils.torch_utils import torch_distributed_zero_first
# Parameters
help_url = 'https://github.com/ultralytics/yolov5/wiki/Train-Custom-Data'
img_formats = ['.bmp', '.jpg', '.jpeg', '.png', '.tif', '.tiff', '.dng']
vid_formats = ['.mov', '.avi', '.mp4', '.mpg', '.mpeg', '.m4v', '.wmv', '.mkv']
@ -50,7 +54,7 @@ def exif_size(img):
def create_dataloader(path, imgsz, batch_size, stride, opt, hyp=None, augment=False, cache=False, pad=0.0, rect=False,
rank=-1, world_size=1, workers=8):
# Make sure only the first process in DDP process the dataset first, and the following others can use the cache.
# Make sure only the first process in DDP process the dataset first, and the following others can use the cache
with torch_distributed_zero_first(rank):
dataset = LoadImagesAndLabels(path, imgsz, batch_size,
augment=augment, # augment images
@ -75,9 +79,9 @@ def create_dataloader(path, imgsz, batch_size, stride, opt, hyp=None, augment=Fa
class InfiniteDataLoader(torch.utils.data.dataloader.DataLoader):
""" Dataloader that reuses workers.
""" Dataloader that reuses workers
Uses same syntax as vanilla DataLoader.
Uses same syntax as vanilla DataLoader
"""
def __init__(self, *args, **kwargs):
@ -94,7 +98,7 @@ class InfiniteDataLoader(torch.utils.data.dataloader.DataLoader):
class _RepeatSampler(object):
""" Sampler that repeats forever.
""" Sampler that repeats forever
Args:
sampler (Sampler)
@ -177,7 +181,6 @@ class LoadImages: # for inference
img = img[:, :, ::-1].transpose(2, 0, 1) # BGR to RGB, to 3x416x416
img = np.ascontiguousarray(img)
# cv2.imwrite(path + '.letterbox.jpg', 255 * img.transpose((1, 2, 0))[:, :, ::-1]) # save letterbox image
return path, img, img0, self.cap
def new_video(self, path):
@ -190,23 +193,15 @@ class LoadImages: # for inference
class LoadWebcam: # for inference
def __init__(self, pipe=0, img_size=640):
def __init__(self, pipe='0', img_size=640):
self.img_size = img_size
if pipe == '0':
pipe = 0 # local camera
if pipe.isnumeric():
pipe = eval(pipe) # local camera
# pipe = 'rtsp://192.168.1.64/1' # IP camera
# pipe = 'rtsp://username:password@192.168.1.64/1' # IP camera with login
# pipe = 'rtsp://170.93.143.139/rtplive/470011e600ef003a004ee33696235daa' # IP traffic camera
# pipe = 'http://wmccpinetop.axiscam.net/mjpg/video.mjpg' # IP golf camera
# https://answers.opencv.org/question/215996/changing-gstreamer-pipeline-to-opencv-in-pythonsolved/
# pipe = '"rtspsrc location="rtsp://username:password@192.168.1.64/1" latency=10 ! appsink' # GStreamer
# https://answers.opencv.org/question/200787/video-acceleration-gstremer-pipeline-in-videocapture/
# https://stackoverflow.com/questions/54095699/install-gstreamer-support-for-opencv-python-package # install help
# pipe = "rtspsrc location=rtsp://root:root@192.168.0.91:554/axis-media/media.amp?videocodec=h264&resolution=3840x2160 protocols=GST_RTSP_LOWER_TRANS_TCP ! rtph264depay ! queue ! vaapih264dec ! videoconvert ! appsink" # GStreamer
self.pipe = pipe
self.cap = cv2.VideoCapture(pipe) # video capture object
self.cap.set(cv2.CAP_PROP_BUFFERSIZE, 3) # set buffer size
@ -895,52 +890,6 @@ def cutout(image, labels):
return labels
def reduce_img_size(path='path/images', img_size=1024): # from utils.datasets import *; reduce_img_size()
# creates a new ./images_reduced folder with reduced size images of maximum size img_size
path_new = path + '_reduced' # reduced images path
create_folder(path_new)
for f in tqdm(glob.glob('%s/*.*' % path)):
try:
img = cv2.imread(f)
h, w = img.shape[:2]
r = img_size / max(h, w) # size ratio
if r < 1.0:
img = cv2.resize(img, (int(w * r), int(h * r)), interpolation=cv2.INTER_AREA) # _LINEAR fastest
fnew = f.replace(path, path_new) # .replace(Path(f).suffix, '.jpg')
cv2.imwrite(fnew, img)
except:
print('WARNING: image failure %s' % f)
def recursive_dataset2bmp(dataset='path/dataset_bmp'): # from utils.datasets import *; recursive_dataset2bmp()
# Converts dataset to bmp (for faster training)
formats = [x.lower() for x in img_formats] + [x.upper() for x in img_formats]
for a, b, files in os.walk(dataset):
for file in tqdm(files, desc=a):
p = a + '/' + file
s = Path(file).suffix
if s == '.txt': # replace text
with open(p, 'r') as f:
lines = f.read()
for f in formats:
lines = lines.replace(f, '.bmp')
with open(p, 'w') as f:
f.write(lines)
elif s in formats: # replace image
cv2.imwrite(p.replace(s, '.bmp'), cv2.imread(p))
if s != '.bmp':
os.system("rm '%s'" % p)
def imagelist2folder(path='path/images.txt'): # from utils.datasets import *; imagelist2folder()
# Copies all the images in a text file (list of images) into a folder
create_folder(path[:-4])
with open(path, 'r') as f:
for line in f.read().splitlines():
os.system('cp "%s" %s' % (line, path[:-4]))
print(line)
def create_folder(path='./new'):
# Create folder
if os.path.exists(path):

15
utils/evolve.sh
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@ -1,15 +0,0 @@
#!/bin/bash
# Hyperparameter evolution commands (avoids CUDA memory leakage issues)
# Replaces train.py python generations 'for' loop with a bash 'for' loop
# Start on 4-GPU machine
#for i in 0 1 2 3; do
# t=ultralytics/yolov5:evolve && sudo docker pull $t && sudo docker run -d --ipc=host --gpus all -v "$(pwd)"/VOC:/usr/src/VOC $t bash utils/evolve.sh $i
# sleep 60 # avoid simultaneous evolve.txt read/write
#done
# Hyperparameter evolution commands
while true; do
# python train.py --batch 64 --weights yolov5m.pt --data voc.yaml --img 512 --epochs 50 --evolve --bucket ult/evolve/voc --device $1
python train.py --batch 40 --weights yolov5m.pt --data coco.yaml --img 640 --epochs 30 --evolve --bucket ult/evolve/coco --device $1
done

888
utils/general.py
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@ -1,3 +1,5 @@
# General utils
import glob
import logging
import math
@ -5,27 +7,19 @@ import os
import platform
import random
import re
import shutil
import subprocess
import time
from contextlib import contextmanager
from copy import copy
from pathlib import Path
import cv2
import matplotlib
import matplotlib.pyplot as plt
import numpy as np
import torch
import torch.nn as nn
import yaml
from PIL import Image
from scipy.cluster.vq import kmeans
from scipy.signal import butter, filtfilt
from tqdm import tqdm
from utils.google_utils import gsutil_getsize
from utils.torch_utils import is_parallel, init_torch_seeds
from utils.metrics import fitness
from utils.torch_utils import init_torch_seeds
# Set printoptions
torch.set_printoptions(linewidth=320, precision=5, profile='long')
@ -36,18 +30,6 @@ matplotlib.rc('font', **{'size': 11})
cv2.setNumThreads(0)
@contextmanager
def torch_distributed_zero_first(local_rank: int):
"""
Decorator to make all processes in distributed training wait for each local_master to do something.
"""
if local_rank not in [-1, 0]:
torch.distributed.barrier()
yield
if local_rank == 0:
torch.distributed.barrier()
def set_logging(rank=-1):
logging.basicConfig(
format="%(message)s",
@ -82,51 +64,6 @@ def check_img_size(img_size, s=32):
return new_size
def check_anchors(dataset, model, thr=4.0, imgsz=640):
# Check anchor fit to data, recompute if necessary
print('\nAnalyzing anchors... ', end='')
m = model.module.model[-1] if hasattr(model, 'module') else model.model[-1] # Detect()
shapes = imgsz * dataset.shapes / dataset.shapes.max(1, keepdims=True)
scale = np.random.uniform(0.9, 1.1, size=(shapes.shape[0], 1)) # augment scale
wh = torch.tensor(np.concatenate([l[:, 3:5] * s for s, l in zip(shapes * scale, dataset.labels)])).float() # wh
def metric(k): # compute metric
r = wh[:, None] / k[None]
x = torch.min(r, 1. / r).min(2)[0] # ratio metric
best = x.max(1)[0] # best_x
aat = (x > 1. / thr).float().sum(1).mean() # anchors above threshold
bpr = (best > 1. / thr).float().mean() # best possible recall
return bpr, aat
bpr, aat = metric(m.anchor_grid.clone().cpu().view(-1, 2))
print('anchors/target = %.2f, Best Possible Recall (BPR) = %.4f' % (aat, bpr), end='')
if bpr < 0.98: # threshold to recompute
print('. Attempting to generate improved anchors, please wait...' % bpr)
na = m.anchor_grid.numel() // 2 # number of anchors
new_anchors = kmean_anchors(dataset, n=na, img_size=imgsz, thr=thr, gen=1000, verbose=False)
new_bpr = metric(new_anchors.reshape(-1, 2))[0]
if new_bpr > bpr: # replace anchors
new_anchors = torch.tensor(new_anchors, device=m.anchors.device).type_as(m.anchors)
m.anchor_grid[:] = new_anchors.clone().view_as(m.anchor_grid) # for inference
m.anchors[:] = new_anchors.clone().view_as(m.anchors) / m.stride.to(m.anchors.device).view(-1, 1, 1) # loss
check_anchor_order(m)
print('New anchors saved to model. Update model *.yaml to use these anchors in the future.')
else:
print('Original anchors better than new anchors. Proceeding with original anchors.')
print('') # newline
def check_anchor_order(m):
# Check anchor order against stride order for YOLOv5 Detect() module m, and correct if necessary
a = m.anchor_grid.prod(-1).view(-1) # anchor area
da = a[-1] - a[0] # delta a
ds = m.stride[-1] - m.stride[0] # delta s
if da.sign() != ds.sign(): # same order
print('Reversing anchor order')
m.anchors[:] = m.anchors.flip(0)
m.anchor_grid[:] = m.anchor_grid.flip(0)
def check_file(file):
# Search for file if not found
if os.path.isfile(file) or file == '':
@ -139,7 +76,7 @@ def check_file(file):
def check_dataset(dict):
# Download dataset if not found
# Download dataset if not found locally
val, s = dict.get('val'), dict.get('download')
if val and len(val):
val = [os.path.abspath(x) for x in (val if isinstance(val, list) else [val])] # val path
@ -247,106 +184,6 @@ def clip_coords(boxes, img_shape):
boxes[:, 3].clamp_(0, img_shape[0]) # y2
def ap_per_class(tp, conf, pred_cls, target_cls, plot=False, fname='precision-recall_curve.png'):
""" Compute the average precision, given the recall and precision curves.
Source: https://github.com/rafaelpadilla/Object-Detection-Metrics.
# Arguments
tp: True positives (nparray, nx1 or nx10).
conf: Objectness value from 0-1 (nparray).
pred_cls: Predicted object classes (nparray).
target_cls: True object classes (nparray).
plot: Plot precision-recall curve at mAP@0.5
fname: Plot filename
# Returns
The average precision as computed in py-faster-rcnn.
"""
# Sort by objectness
i = np.argsort(-conf)
tp, conf, pred_cls = tp[i], conf[i], pred_cls[i]
# Find unique classes
unique_classes = np.unique(target_cls)
# Create Precision-Recall curve and compute AP for each class
px, py = np.linspace(0, 1, 1000), [] # for plotting
pr_score = 0.1 # score to evaluate P and R https://github.com/ultralytics/yolov3/issues/898
s = [unique_classes.shape[0], tp.shape[1]] # number class, number iou thresholds (i.e. 10 for mAP0.5...0.95)
ap, p, r = np.zeros(s), np.zeros(s), np.zeros(s)
for ci, c in enumerate(unique_classes):
i = pred_cls == c
n_l = (target_cls == c).sum() # number of labels
n_p = i.sum() # number of predictions
if n_p == 0 or n_l == 0:
continue
else:
# Accumulate FPs and TPs
fpc = (1 - tp[i]).cumsum(0)
tpc = tp[i].cumsum(0)
# Recall
recall = tpc / (n_l + 1e-16) # recall curve
r[ci] = np.interp(-pr_score, -conf[i], recall[:, 0]) # r at pr_score, negative x, xp because xp decreases
# Precision
precision = tpc / (tpc + fpc) # precision curve
p[ci] = np.interp(-pr_score, -conf[i], precision[:, 0]) # p at pr_score
# AP from recall-precision curve
for j in range(tp.shape[1]):
ap[ci, j], mpre, mrec = compute_ap(recall[:, j], precision[:, j])
if j == 0:
py.append(np.interp(px, mrec, mpre)) # precision at mAP@0.5
# Compute F1 score (harmonic mean of precision and recall)
f1 = 2 * p * r / (p + r + 1e-16)
if plot:
py = np.stack(py, axis=1)
fig, ax = plt.subplots(1, 1, figsize=(5, 5))
ax.plot(px, py, linewidth=0.5, color='grey') # plot(recall, precision)
ax.plot(px, py.mean(1), linewidth=2, color='blue', label='all classes %.3f mAP@0.5' % ap[:, 0].mean())
ax.set_xlabel('Recall')
ax.set_ylabel('Precision')
ax.set_xlim(0, 1)
ax.set_ylim(0, 1)
plt.legend()
fig.tight_layout()
fig.savefig(fname, dpi=200)
return p, r, ap, f1, unique_classes.astype('int32')
def compute_ap(recall, precision):
""" Compute the average precision, given the recall and precision curves.
Source: https://github.com/rbgirshick/py-faster-rcnn.
# Arguments
recall: The recall curve (list).
precision: The precision curve (list).
# Returns
The average precision as computed in py-faster-rcnn.
"""
# Append sentinel values to beginning and end
mrec = recall # np.concatenate(([0.], recall, [recall[-1] + 1E-3]))
mpre = precision # np.concatenate(([0.], precision, [0.]))
# Compute the precision envelope
mpre = np.flip(np.maximum.accumulate(np.flip(mpre)))
# Integrate area under curve
method = 'interp' # methods: 'continuous', 'interp'
if method == 'interp':
x = np.linspace(0, 1, 101) # 101-point interp (COCO)
ap = np.trapz(np.interp(x, mrec, mpre), x) # integrate
else: # 'continuous'
i = np.where(mrec[1:] != mrec[:-1])[0] # points where x axis (recall) changes
ap = np.sum((mrec[i + 1] - mrec[i]) * mpre[i + 1]) # area under curve
return ap, mpre, mrec
def bbox_iou(box1, box2, x1y1x2y2=True, GIoU=False, DIoU=False, CIoU=False, eps=1e-9):
# Returns the IoU of box1 to box2. box1 is 4, box2 is nx4
box2 = box2.T
@ -425,178 +262,6 @@ def wh_iou(wh1, wh2):
return inter / (wh1.prod(2) + wh2.prod(2) - inter) # iou = inter / (area1 + area2 - inter)
class FocalLoss(nn.Module):
# Wraps focal loss around existing loss_fcn(), i.e. criteria = FocalLoss(nn.BCEWithLogitsLoss(), gamma=1.5)
def __init__(self, loss_fcn, gamma=1.5, alpha=0.25):
super(FocalLoss, self).__init__()
self.loss_fcn = loss_fcn # must be nn.BCEWithLogitsLoss()
self.gamma = gamma
self.alpha = alpha
self.reduction = loss_fcn.reduction
self.loss_fcn.reduction = 'none' # required to apply FL to each element
def forward(self, pred, true):
loss = self.loss_fcn(pred, true)
# p_t = torch.exp(-loss)
# loss *= self.alpha * (1.000001 - p_t) ** self.gamma # non-zero power for gradient stability
# TF implementation https://github.com/tensorflow/addons/blob/v0.7.1/tensorflow_addons/losses/focal_loss.py
pred_prob = torch.sigmoid(pred) # prob from logits
p_t = true * pred_prob + (1 - true) * (1 - pred_prob)
alpha_factor = true * self.alpha + (1 - true) * (1 - self.alpha)
modulating_factor = (1.0 - p_t) ** self.gamma
loss *= alpha_factor * modulating_factor
if self.reduction == 'mean':
return loss.mean()
elif self.reduction == 'sum':
return loss.sum()
else: # 'none'
return loss
def smooth_BCE(eps=0.1): # https://github.com/ultralytics/yolov3/issues/238#issuecomment-598028441
# return positive, negative label smoothing BCE targets
return 1.0 - 0.5 * eps, 0.5 * eps
class BCEBlurWithLogitsLoss(nn.Module):
# BCEwithLogitLoss() with reduced missing label effects.
def __init__(self, alpha=0.05):
super(BCEBlurWithLogitsLoss, self).__init__()
self.loss_fcn = nn.BCEWithLogitsLoss(reduction='none') # must be nn.BCEWithLogitsLoss()
self.alpha = alpha
def forward(self, pred, true):
loss = self.loss_fcn(pred, true)
pred = torch.sigmoid(pred) # prob from logits
dx = pred - true # reduce only missing label effects
# dx = (pred - true).abs() # reduce missing label and false label effects
alpha_factor = 1 - torch.exp((dx - 1) / (self.alpha + 1e-4))
loss *= alpha_factor
return loss.mean()
def compute_loss(p, targets, model): # predictions, targets, model
device = targets.device
lcls, lbox, lobj = torch.zeros(1, device=device), torch.zeros(1, device=device), torch.zeros(1, device=device)
tcls, tbox, indices, anchors = build_targets(p, targets, model) # targets
h = model.hyp # hyperparameters
# Define criteria
BCEcls = nn.BCEWithLogitsLoss(pos_weight=torch.Tensor([h['cls_pw']])).to(device)
BCEobj = nn.BCEWithLogitsLoss(pos_weight=torch.Tensor([h['obj_pw']])).to(device)
# Class label smoothing https://arxiv.org/pdf/1902.04103.pdf eqn 3
cp, cn = smooth_BCE(eps=0.0)
# Focal loss
g = h['fl_gamma'] # focal loss gamma
if g > 0:
BCEcls, BCEobj = FocalLoss(BCEcls, g), FocalLoss(BCEobj, g)
# Losses
nt = 0 # number of targets
np = len(p) # number of outputs
balance = [4.0, 1.0, 0.4] if np == 3 else [4.0, 1.0, 0.4, 0.1] # P3-5 or P3-6
for i, pi in enumerate(p): # layer index, layer predictions
b, a, gj, gi = indices[i] # image, anchor, gridy, gridx
tobj = torch.zeros_like(pi[..., 0], device=device) # target obj
n = b.shape[0] # number of targets
if n:
nt += n # cumulative targets
ps = pi[b, a, gj, gi] # prediction subset corresponding to targets
# Regression
pxy = ps[:, :2].sigmoid() * 2. - 0.5
pwh = (ps[:, 2:4].sigmoid() * 2) ** 2 * anchors[i]
pbox = torch.cat((pxy, pwh), 1).to(device) # predicted box
iou = bbox_iou(pbox.T, tbox[i], x1y1x2y2=False, CIoU=True) # iou(prediction, target)
lbox += (1.0 - iou).mean() # iou loss
# Objectness
tobj[b, a, gj, gi] = (1.0 - model.gr) + model.gr * iou.detach().clamp(0).type(tobj.dtype) # iou ratio
# Classification
if model.nc > 1: # cls loss (only if multiple classes)
t = torch.full_like(ps[:, 5:], cn, device=device) # targets
t[range(n), tcls[i]] = cp
lcls += BCEcls(ps[:, 5:], t) # BCE
# Append targets to text file
# with open('targets.txt', 'a') as file:
# [file.write('%11.5g ' * 4 % tuple(x) + '\n') for x in torch.cat((txy[i], twh[i]), 1)]
lobj += BCEobj(pi[..., 4], tobj) * balance[i] # obj loss
s = 3 / np # output count scaling
lbox *= h['box'] * s
lobj *= h['obj'] * s * (1.4 if np == 4 else 1.)
lcls *= h['cls'] * s
bs = tobj.shape[0] # batch size
loss = lbox + lobj + lcls
return loss * bs, torch.cat((lbox, lobj, lcls, loss)).detach()
def build_targets(p, targets, model):
# Build targets for compute_loss(), input targets(image,class,x,y,w,h)
det = model.module.model[-1] if is_parallel(model) else model.model[-1] # Detect() module
na, nt = det.na, targets.shape[0] # number of anchors, targets
tcls, tbox, indices, anch = [], [], [], []
gain = torch.ones(7, device=targets.device) # normalized to gridspace gain
ai = torch.arange(na, device=targets.device).float().view(na, 1).repeat(1, nt) # same as .repeat_interleave(nt)
targets = torch.cat((targets.repeat(na, 1, 1), ai[:, :, None]), 2) # append anchor indices
g = 0.5 # bias
off = torch.tensor([[0, 0],
[1, 0], [0, 1], [-1, 0], [0, -1], # j,k,l,m
# [1, 1], [1, -1], [-1, 1], [-1, -1], # jk,jm,lk,lm
], device=targets.device).float() * g # offsets
for i in range(det.nl):
anchors = det.anchors[i]
gain[2:6] = torch.tensor(p[i].shape)[[3, 2, 3, 2]] # xyxy gain
# Match targets to anchors
t = targets * gain
if nt:
# Matches
r = t[:, :, 4:6] / anchors[:, None] # wh ratio
j = torch.max(r, 1. / r).max(2)[0] < model.hyp['anchor_t'] # compare
# j = wh_iou(anchors, t[:, 4:6]) > model.hyp['iou_t'] # iou(3,n)=wh_iou(anchors(3,2), gwh(n,2))
t = t[j] # filter
# Offsets
gxy = t[:, 2:4] # grid xy
gxi = gain[[2, 3]] - gxy # inverse
j, k = ((gxy % 1. < g) & (gxy > 1.)).T
l, m = ((gxi % 1. < g) & (gxi > 1.)).T
j = torch.stack((torch.ones_like(j), j, k, l, m))
t = t.repeat((5, 1, 1))[j]
offsets = (torch.zeros_like(gxy)[None] + off[:, None])[j]
else:
t = targets[0]
offsets = 0
# Define
b, c = t[:, :2].long().T # image, class
gxy = t[:, 2:4] # grid xy
gwh = t[:, 4:6] # grid wh
gij = (gxy - offsets).long()
gi, gj = gij.T # grid xy indices
# Append
a = t[:, 6].long() # anchor indices
indices.append((b, a, gj.clamp_(0, gain[3] - 1), gi.clamp_(0, gain[2] - 1))) # image, anchor, grid indices
tbox.append(torch.cat((gxy - gij, gwh), 1)) # box
anch.append(anchors[a]) # anchors
tcls.append(c) # class
return tcls, tbox, indices, anch
def non_max_suppression(prediction, conf_thres=0.1, iou_thres=0.6, merge=False, classes=None, agnostic=False):
"""Performs Non-Maximum Suppression (NMS) on inference results
@ -662,15 +327,12 @@ def non_max_suppression(prediction, conf_thres=0.1, iou_thres=0.6, merge=False,
if i.shape[0] > max_det: # limit detections
i = i[:max_det]
if merge and (1 < n < 3E3): # Merge NMS (boxes merged using weighted mean)
try: # update boxes as boxes(i,4) = weights(i,n) * boxes(n,4)
iou = box_iou(boxes[i], boxes) > iou_thres # iou matrix
weights = iou * scores[None] # box weights
x[i, :4] = torch.mm(weights, x[:, :4]).float() / weights.sum(1, keepdim=True) # merged boxes
if redundant:
i = i[iou.sum(1) > 1] # require redundancy
except: # possible CUDA error https://github.com/ultralytics/yolov3/issues/1139
print(x, i, x.shape, i.shape)
pass
# update boxes as boxes(i,4) = weights(i,n) * boxes(n,4)
iou = box_iou(boxes[i], boxes) > iou_thres # iou matrix
weights = iou * scores[None] # box weights
x[i, :4] = torch.mm(weights, x[:, :4]).float() / weights.sum(1, keepdim=True) # merged boxes
if redundant:
i = i[iou.sum(1) > 1] # require redundancy
output[xi] = x[i]
if (time.time() - t) > time_limit:
@ -693,170 +355,6 @@ def strip_optimizer(f='weights/best.pt', s=''): # from utils.general import *;
print('Optimizer stripped from %s,%s %.1fMB' % (f, (' saved as %s,' % s) if s else '', mb))
def coco_class_count(path='../coco/labels/train2014/'):
# Histogram of occurrences per class
nc = 80 # number classes
x = np.zeros(nc, dtype='int32')
files = sorted(glob.glob('%s/*.*' % path))
for i, file in enumerate(files):
labels = np.loadtxt(file, dtype=np.float32).reshape(-1, 5)
x += np.bincount(labels[:, 0].astype('int32'), minlength=nc)
print(i, len(files))
def coco_only_people(path='../coco/labels/train2017/'): # from utils.general import *; coco_only_people()
# Find images with only people
files = sorted(glob.glob('%s/*.*' % path))
for i, file in enumerate(files):
labels = np.loadtxt(file, dtype=np.float32).reshape(-1, 5)
if all(labels[:, 0] == 0):
print(labels.shape[0], file)
def crop_images_random(path='../images/', scale=0.50): # from utils.general import *; crop_images_random()
# crops images into random squares up to scale fraction
# WARNING: overwrites images!
for file in tqdm(sorted(glob.glob('%s/*.*' % path))):
img = cv2.imread(file) # BGR
if img is not None:
h, w = img.shape[:2]
# create random mask
a = 30 # minimum size (pixels)
mask_h = random.randint(a, int(max(a, h * scale))) # mask height
mask_w = mask_h # mask width
# box
xmin = max(0, random.randint(0, w) - mask_w // 2)
ymin = max(0, random.randint(0, h) - mask_h // 2)
xmax = min(w, xmin + mask_w)
ymax = min(h, ymin + mask_h)
# apply random color mask
cv2.imwrite(file, img[ymin:ymax, xmin:xmax])
def coco_single_class_labels(path='../coco/labels/train2014/', label_class=43):
# Makes single-class coco datasets. from utils.general import *; coco_single_class_labels()
if os.path.exists('new/'):
shutil.rmtree('new/') # delete output folder
os.makedirs('new/') # make new output folder
os.makedirs('new/labels/')
os.makedirs('new/images/')
for file in tqdm(sorted(glob.glob('%s/*.*' % path))):
with open(file, 'r') as f:
labels = np.array([x.split() for x in f.read().splitlines()], dtype=np.float32)
i = labels[:, 0] == label_class
if any(i):
img_file = file.replace('labels', 'images').replace('txt', 'jpg')
labels[:, 0] = 0 # reset class to 0
with open('new/images.txt', 'a') as f: # add image to dataset list
f.write(img_file + '\n')
with open('new/labels/' + Path(file).name, 'a') as f: # write label
for l in labels[i]:
f.write('%g %.6f %.6f %.6f %.6f\n' % tuple(l))
shutil.copyfile(src=img_file, dst='new/images/' + Path(file).name.replace('txt', 'jpg')) # copy images
def kmean_anchors(path='./data/coco128.yaml', n=9, img_size=640, thr=4.0, gen=1000, verbose=True):
""" Creates kmeans-evolved anchors from training dataset
Arguments:
path: path to dataset *.yaml, or a loaded dataset
n: number of anchors
img_size: image size used for training
thr: anchor-label wh ratio threshold hyperparameter hyp['anchor_t'] used for training, default=4.0
gen: generations to evolve anchors using genetic algorithm
Return:
k: kmeans evolved anchors
Usage:
from utils.general import *; _ = kmean_anchors()
"""
thr = 1. / thr
def metric(k, wh): # compute metrics
r = wh[:, None] / k[None]
x = torch.min(r, 1. / r).min(2)[0] # ratio metric
# x = wh_iou(wh, torch.tensor(k)) # iou metric
return x, x.max(1)[0] # x, best_x
def fitness(k): # mutation fitness
_, best = metric(torch.tensor(k, dtype=torch.float32), wh)
return (best * (best > thr).float()).mean() # fitness
def print_results(k):
k = k[np.argsort(k.prod(1))] # sort small to large
x, best = metric(k, wh0)
bpr, aat = (best > thr).float().mean(), (x > thr).float().mean() * n # best possible recall, anch > thr
print('thr=%.2f: %.4f best possible recall, %.2f anchors past thr' % (thr, bpr, aat))
print('n=%g, img_size=%s, metric_all=%.3f/%.3f-mean/best, past_thr=%.3f-mean: ' %
(n, img_size, x.mean(), best.mean(), x[x > thr].mean()), end='')
for i, x in enumerate(k):
print('%i,%i' % (round(x[0]), round(x[1])), end=', ' if i < len(k) - 1 else '\n') # use in *.cfg
return k
if isinstance(path, str): # *.yaml file
with open(path) as f:
data_dict = yaml.load(f, Loader=yaml.FullLoader) # model dict
from utils.datasets import LoadImagesAndLabels
dataset = LoadImagesAndLabels(data_dict['train'], augment=True, rect=True)
else:
dataset = path # dataset
# Get label wh
shapes = img_size * dataset.shapes / dataset.shapes.max(1, keepdims=True)
wh0 = np.concatenate([l[:, 3:5] * s for s, l in zip(shapes, dataset.labels)]) # wh
# Filter
i = (wh0 < 3.0).any(1).sum()
if i:
print('WARNING: Extremely small objects found. '
'%g of %g labels are < 3 pixels in width or height.' % (i, len(wh0)))
wh = wh0[(wh0 >= 2.0).any(1)] # filter > 2 pixels
# Kmeans calculation
print('Running kmeans for %g anchors on %g points...' % (n, len(wh)))
s = wh.std(0) # sigmas for whitening
k, dist = kmeans(wh / s, n, iter=30) # points, mean distance
k *= s
wh = torch.tensor(wh, dtype=torch.float32) # filtered
wh0 = torch.tensor(wh0, dtype=torch.float32) # unfiltered
k = print_results(k)
# Plot
# k, d = [None] * 20, [None] * 20
# for i in tqdm(range(1, 21)):
# k[i-1], d[i-1] = kmeans(wh / s, i) # points, mean distance
# fig, ax = plt.subplots(1, 2, figsize=(14, 7))
# ax = ax.ravel()
# ax[0].plot(np.arange(1, 21), np.array(d) ** 2, marker='.')
# fig, ax = plt.subplots(1, 2, figsize=(14, 7)) # plot wh
# ax[0].hist(wh[wh[:, 0]<100, 0],400)
# ax[1].hist(wh[wh[:, 1]<100, 1],400)
# fig.tight_layout()
# fig.savefig('wh.png', dpi=200)
# Evolve
npr = np.random
f, sh, mp, s = fitness(k), k.shape, 0.9, 0.1 # fitness, generations, mutation prob, sigma
pbar = tqdm(range(gen), desc='Evolving anchors with Genetic Algorithm') # progress bar
for _ in pbar:
v = np.ones(sh)
while (v == 1).all(): # mutate until a change occurs (prevent duplicates)
v = ((npr.random(sh) < mp) * npr.random() * npr.randn(*sh) * s + 1).clip(0.3, 3.0)
kg = (k.copy() * v).clip(min=2.0)
fg = fitness(kg)
if fg > f:
f, k = fg, kg.copy()
pbar.desc = 'Evolving anchors with Genetic Algorithm: fitness = %.4f' % f
if verbose:
print_results(k)
return print_results(k)
def print_mutation(hyp, results, yaml_file='hyp_evolved.yaml', bucket=''):
# Print mutation results to evolve.txt (for use with train.py --evolve)
a = '%10s' * len(hyp) % tuple(hyp.keys()) # hyperparam keys
@ -923,34 +421,6 @@ def apply_classifier(x, model, img, im0):
return x
def fitness(x):
# Returns fitness (for use with results.txt or evolve.txt)
w = [0.0, 0.0, 0.1, 0.9] # weights for [P, R, mAP@0.5, mAP@0.5:0.95]
return (x[:, :4] * w).sum(1)
def output_to_target(output, width, height):
# Convert model output to target format [batch_id, class_id, x, y, w, h, conf]
if isinstance(output, torch.Tensor):
output = output.cpu().numpy()
targets = []
for i, o in enumerate(output):
if o is not None:
for pred in o:
box = pred[:4]
w = (box[2] - box[0]) / width
h = (box[3] - box[1]) / height
x = box[0] / width + w / 2
y = box[1] / height + h / 2
conf = pred[4]
cls = int(pred[5])
targets.append([i, cls, x, y, w, h, conf])
return np.array(targets)
def increment_path(path, exist_ok=True, sep=''):
# Increment path, i.e. runs/exp --> runs/exp{sep}0, runs/exp{sep}1 etc.
path = Path(path) # os-agnostic
@ -962,339 +432,3 @@ def increment_path(path, exist_ok=True, sep=''):
i = [int(m.groups()[0]) for m in matches if m] # indices
n = max(i) + 1 if i else 2 # increment number
return f"{path}{sep}{n}" # update path
# Plotting functions ---------------------------------------------------------------------------------------------------
def hist2d(x, y, n=100):
# 2d histogram used in labels.png and evolve.png
xedges, yedges = np.linspace(x.min(), x.max(), n), np.linspace(y.min(), y.max(), n)
hist, xedges, yedges = np.histogram2d(x, y, (xedges, yedges))
xidx = np.clip(np.digitize(x, xedges) - 1, 0, hist.shape[0] - 1)
yidx = np.clip(np.digitize(y, yedges) - 1, 0, hist.shape[1] - 1)
return np.log(hist[xidx, yidx])
def butter_lowpass_filtfilt(data, cutoff=1500, fs=50000, order=5):
# https://stackoverflow.com/questions/28536191/how-to-filter-smooth-with-scipy-numpy
def butter_lowpass(cutoff, fs, order):
nyq = 0.5 * fs
normal_cutoff = cutoff / nyq
b, a = butter(order, normal_cutoff, btype='low', analog=False)
return b, a
b, a = butter_lowpass(cutoff, fs, order=order)
return filtfilt(b, a, data) # forward-backward filter
def plot_one_box(x, img, color=None, label=None, line_thickness=None):
# Plots one bounding box on image img
tl = line_thickness or round(0.002 * (img.shape[0] + img.shape[1]) / 2) + 1 # line/font thickness
color = color or [random.randint(0, 255) for _ in range(3)]
c1, c2 = (int(x[0]), int(x[1])), (int(x[2]), int(x[3]))
cv2.rectangle(img, c1, c2, color, thickness=tl, lineType=cv2.LINE_AA)
if label:
tf = max(tl - 1, 1) # font thickness
t_size = cv2.getTextSize(label, 0, fontScale=tl / 3, thickness=tf)[0]
c2 = c1[0] + t_size[0], c1[1] - t_size[1] - 3
cv2.rectangle(img, c1, c2, color, -1, cv2.LINE_AA) # filled
cv2.putText(img, label, (c1[0], c1[1] - 2), 0, tl / 3, [225, 255, 255], thickness=tf, lineType=cv2.LINE_AA)
def plot_wh_methods(): # from utils.general import *; plot_wh_methods()
# Compares the two methods for width-height anchor multiplication
# https://github.com/ultralytics/yolov3/issues/168
x = np.arange(-4.0, 4.0, .1)
ya = np.exp(x)
yb = torch.sigmoid(torch.from_numpy(x)).numpy() * 2
fig = plt.figure(figsize=(6, 3), dpi=150)
plt.plot(x, ya, '.-', label='YOLOv3')
plt.plot(x, yb ** 2, '.-', label='YOLOv5 ^2')
plt.plot(x, yb ** 1.6, '.-', label='YOLOv5 ^1.6')
plt.xlim(left=-4, right=4)
plt.ylim(bottom=0, top=6)
plt.xlabel('input')
plt.ylabel('output')
plt.grid()
plt.legend()
fig.tight_layout()
fig.savefig('comparison.png', dpi=200)
def plot_images(images, targets, paths=None, fname='images.jpg', names=None, max_size=640, max_subplots=16):
tl = 3 # line thickness
tf = max(tl - 1, 1) # font thickness
if isinstance(images, torch.Tensor):
images = images.cpu().float().numpy()
if isinstance(targets, torch.Tensor):
targets = targets.cpu().numpy()
# un-normalise
if np.max(images[0]) <= 1:
images *= 255
bs, _, h, w = images.shape # batch size, _, height, width
bs = min(bs, max_subplots) # limit plot images
ns = np.ceil(bs ** 0.5) # number of subplots (square)
# Check if we should resize
scale_factor = max_size / max(h, w)
if scale_factor < 1:
h = math.ceil(scale_factor * h)
w = math.ceil(scale_factor * w)
# Empty array for output
mosaic = np.full((int(ns * h), int(ns * w), 3), 255, dtype=np.uint8)
# Fix class - colour map
prop_cycle = plt.rcParams['axes.prop_cycle']
# https://stackoverflow.com/questions/51350872/python-from-color-name-to-rgb
hex2rgb = lambda h: tuple(int(h[1 + i:1 + i + 2], 16) for i in (0, 2, 4))
color_lut = [hex2rgb(h) for h in prop_cycle.by_key()['color']]
for i, img in enumerate(images):
if i == max_subplots: # if last batch has fewer images than we expect
break
block_x = int(w * (i // ns))
block_y = int(h * (i % ns))
img = img.transpose(1, 2, 0)
if scale_factor < 1:
img = cv2.resize(img, (w, h))
mosaic[block_y:block_y + h, block_x:block_x + w, :] = img
if len(targets) > 0:
image_targets = targets[targets[:, 0] == i]
boxes = xywh2xyxy(image_targets[:, 2:6]).T
classes = image_targets[:, 1].astype('int')
labels = image_targets.shape[1] == 6 # labels if no conf column
conf = None if labels else image_targets[:, 6] # check for confidence presence (label vs pred)
boxes[[0, 2]] *= w
boxes[[0, 2]] += block_x
boxes[[1, 3]] *= h
boxes[[1, 3]] += block_y
for j, box in enumerate(boxes.T):
cls = int(classes[j])
color = color_lut[cls % len(color_lut)]
cls = names[cls] if names else cls
if labels or conf[j] > 0.3: # 0.3 conf thresh
label = '%s' % cls if labels else '%s %.1f' % (cls, conf[j])
plot_one_box(box, mosaic, label=label, color=color, line_thickness=tl)
# Draw image filename labels
if paths is not None:
label = os.path.basename(paths[i])[:40] # trim to 40 char
t_size = cv2.getTextSize(label, 0, fontScale=tl / 3, thickness=tf)[0]
cv2.putText(mosaic, label, (block_x + 5, block_y + t_size[1] + 5), 0, tl / 3, [220, 220, 220], thickness=tf,
lineType=cv2.LINE_AA)
# Image border
cv2.rectangle(mosaic, (block_x, block_y), (block_x + w, block_y + h), (255, 255, 255), thickness=3)
if fname is not None:
r = min(1280. / max(h, w) / ns, 1.0) # ratio to limit image size
mosaic = cv2.resize(mosaic, (int(ns * w * r), int(ns * h * r)), interpolation=cv2.INTER_AREA)
# cv2.imwrite(fname, cv2.cvtColor(mosaic, cv2.COLOR_BGR2RGB)) # cv2 save
Image.fromarray(mosaic).save(fname) # PIL save
return mosaic
def plot_lr_scheduler(optimizer, scheduler, epochs=300, save_dir=''):
# Plot LR simulating training for full epochs
optimizer, scheduler = copy(optimizer), copy(scheduler) # do not modify originals
y = []
for _ in range(epochs):
scheduler.step()
y.append(optimizer.param_groups[0]['lr'])
plt.plot(y, '.-', label='LR')
plt.xlabel('epoch')
plt.ylabel('LR')
plt.grid()
plt.xlim(0, epochs)
plt.ylim(0)
plt.tight_layout()
plt.savefig(Path(save_dir) / 'LR.png', dpi=200)
def plot_test_txt(): # from utils.general import *; plot_test()
# Plot test.txt histograms
x = np.loadtxt('test.txt', dtype=np.float32)
box = xyxy2xywh(x[:, :4])
cx, cy = box[:, 0], box[:, 1]
fig, ax = plt.subplots(1, 1, figsize=(6, 6), tight_layout=True)
ax.hist2d(cx, cy, bins=600, cmax=10, cmin=0)
ax.set_aspect('equal')
plt.savefig('hist2d.png', dpi=300)
fig, ax = plt.subplots(1, 2, figsize=(12, 6), tight_layout=True)
ax[0].hist(cx, bins=600)
ax[1].hist(cy, bins=600)
plt.savefig('hist1d.png', dpi=200)
def plot_targets_txt(): # from utils.general import *; plot_targets_txt()
# Plot targets.txt histograms
x = np.loadtxt('targets.txt', dtype=np.float32).T
s = ['x targets', 'y targets', 'width targets', 'height targets']
fig, ax = plt.subplots(2, 2, figsize=(8, 8), tight_layout=True)
ax = ax.ravel()
for i in range(4):
ax[i].hist(x[i], bins=100, label='%.3g +/- %.3g' % (x[i].mean(), x[i].std()))
ax[i].legend()
ax[i].set_title(s[i])
plt.savefig('targets.jpg', dpi=200)
def plot_study_txt(f='study.txt', x=None): # from utils.general import *; plot_study_txt()
# Plot study.txt generated by test.py
fig, ax = plt.subplots(2, 4, figsize=(10, 6), tight_layout=True)
ax = ax.ravel()
fig2, ax2 = plt.subplots(1, 1, figsize=(8, 4), tight_layout=True)
for f in ['study/study_coco_yolov5%s.txt' % x for x in ['s', 'm', 'l', 'x']]:
y = np.loadtxt(f, dtype=np.float32, usecols=[0, 1, 2, 3, 7, 8, 9], ndmin=2).T
x = np.arange(y.shape[1]) if x is None else np.array(x)
s = ['P', 'R', 'mAP@.5', 'mAP@.5:.95', 't_inference (ms/img)', 't_NMS (ms/img)', 't_total (ms/img)']
for i in range(7):
ax[i].plot(x, y[i], '.-', linewidth=2, markersize=8)
ax[i].set_title(s[i])
j = y[3].argmax() + 1
ax2.plot(y[6, :j], y[3, :j] * 1E2, '.-', linewidth=2, markersize=8,
label=Path(f).stem.replace('study_coco_', '').replace('yolo', 'YOLO'))
ax2.plot(1E3 / np.array([209, 140, 97, 58, 35, 18]), [34.6, 40.5, 43.0, 47.5, 49.7, 51.5],
'k.-', linewidth=2, markersize=8, alpha=.25, label='EfficientDet')
ax2.grid()
ax2.set_xlim(0, 30)
ax2.set_ylim(28, 50)
ax2.set_yticks(np.arange(30, 55, 5))
ax2.set_xlabel('GPU Speed (ms/img)')
ax2.set_ylabel('COCO AP val')
ax2.legend(loc='lower right')
plt.savefig('study_mAP_latency.png', dpi=300)
plt.savefig(f.replace('.txt', '.png'), dpi=300)
def plot_labels(labels, save_dir=''):
# plot dataset labels
c, b = labels[:, 0], labels[:, 1:].transpose() # classes, boxes
nc = int(c.max() + 1) # number of classes
fig, ax = plt.subplots(2, 2, figsize=(8, 8), tight_layout=True)
ax = ax.ravel()
ax[0].hist(c, bins=np.linspace(0, nc, nc + 1) - 0.5, rwidth=0.8)
ax[0].set_xlabel('classes')
ax[1].scatter(b[0], b[1], c=hist2d(b[0], b[1], 90), cmap='jet')
ax[1].set_xlabel('x')
ax[1].set_ylabel('y')
ax[2].scatter(b[2], b[3], c=hist2d(b[2], b[3], 90), cmap='jet')
ax[2].set_xlabel('width')
ax[2].set_ylabel('height')
plt.savefig(Path(save_dir) / 'labels.png', dpi=200)
plt.close()
# seaborn correlogram
try:
import seaborn as sns
import pandas as pd
x = pd.DataFrame(b.transpose(), columns=['x', 'y', 'width', 'height'])
sns.pairplot(x, corner=True, diag_kind='hist', kind='scatter', markers='o',
plot_kws=dict(s=3, edgecolor=None, linewidth=1, alpha=0.02),
diag_kws=dict(bins=50))
plt.savefig(Path(save_dir) / 'labels_correlogram.png', dpi=200)
plt.close()
except Exception as e:
pass
def plot_evolution(yaml_file='data/hyp.finetune.yaml'): # from utils.general import *; plot_evolution()
# Plot hyperparameter evolution results in evolve.txt
with open(yaml_file) as f:
hyp = yaml.load(f, Loader=yaml.FullLoader)
x = np.loadtxt('evolve.txt', ndmin=2)
f = fitness(x)
# weights = (f - f.min()) ** 2 # for weighted results
plt.figure(figsize=(10, 12), tight_layout=True)
matplotlib.rc('font', **{'size': 8})
for i, (k, v) in enumerate(hyp.items()):
y = x[:, i + 7]
# mu = (y * weights).sum() / weights.sum() # best weighted result
mu = y[f.argmax()] # best single result
plt.subplot(6, 5, i + 1)
plt.scatter(y, f, c=hist2d(y, f, 20), cmap='viridis', alpha=.8, edgecolors='none')
plt.plot(mu, f.max(), 'k+', markersize=15)
plt.title('%s = %.3g' % (k, mu), fontdict={'size': 9}) # limit to 40 characters
if i % 5 != 0:
plt.yticks([])
print('%15s: %.3g' % (k, mu))
plt.savefig('evolve.png', dpi=200)
print('\nPlot saved as evolve.png')
def plot_results_overlay(start=0, stop=0): # from utils.general import *; plot_results_overlay()
# Plot training 'results*.txt', overlaying train and val losses
s = ['train', 'train', 'train', 'Precision', 'mAP@0.5', 'val', 'val', 'val', 'Recall', 'mAP@0.5:0.95'] # legends
t = ['Box', 'Objectness', 'Classification', 'P-R', 'mAP-F1'] # titles
for f in sorted(glob.glob('results*.txt') + glob.glob('../../Downloads/results*.txt')):
results = np.loadtxt(f, usecols=[2, 3, 4, 8, 9, 12, 13, 14, 10, 11], ndmin=2).T
n = results.shape[1] # number of rows
x = range(start, min(stop, n) if stop else n)
fig, ax = plt.subplots(1, 5, figsize=(14, 3.5), tight_layout=True)
ax = ax.ravel()
for i in range(5):
for j in [i, i + 5]:
y = results[j, x]
ax[i].plot(x, y, marker='.', label=s[j])
# y_smooth = butter_lowpass_filtfilt(y)
# ax[i].plot(x, np.gradient(y_smooth), marker='.', label=s[j])
ax[i].set_title(t[i])
ax[i].legend()
ax[i].set_ylabel(f) if i == 0 else None # add filename
fig.savefig(f.replace('.txt', '.png'), dpi=200)
def plot_results(start=0, stop=0, bucket='', id=(), labels=(), save_dir=''):
# from utils.general import *; plot_results(save_dir='runs/train/exp0')
# Plot training 'results*.txt' as seen in https://github.com/ultralytics/yolov5#reproduce-our-training
fig, ax = plt.subplots(2, 5, figsize=(12, 6))
ax = ax.ravel()
s = ['Box', 'Objectness', 'Classification', 'Precision', 'Recall',
'val Box', 'val Objectness', 'val Classification', 'mAP@0.5', 'mAP@0.5:0.95']
if bucket:
# os.system('rm -rf storage.googleapis.com')
# files = ['https://storage.googleapis.com/%s/results%g.txt' % (bucket, x) for x in id]
files = ['results%g.txt' % x for x in id]
c = ('gsutil cp ' + '%s ' * len(files) + '.') % tuple('gs://%s/results%g.txt' % (bucket, x) for x in id)
os.system(c)
else:
files = glob.glob(str(Path(save_dir) / 'results*.txt')) + glob.glob('../../Downloads/results*.txt')
assert len(files), 'No results.txt files found in %s, nothing to plot.' % os.path.abspath(save_dir)
for fi, f in enumerate(files):
try:
results = np.loadtxt(f, usecols=[2, 3, 4, 8, 9, 12, 13, 14, 10, 11], ndmin=2).T
n = results.shape[1] # number of rows
x = range(start, min(stop, n) if stop else n)
for i in range(10):
y = results[i, x]
if i in [0, 1, 2, 5, 6, 7]:
y[y == 0] = np.nan # don't show zero loss values
# y /= y[0] # normalize
label = labels[fi] if len(labels) else Path(f).stem
ax[i].plot(x, y, marker='.', label=label, linewidth=1, markersize=6)
ax[i].set_title(s[i])
# if i in [5, 6, 7]: # share train and val loss y axes
# ax[i].get_shared_y_axes().join(ax[i], ax[i - 5])
except Exception as e:
print('Warning: Plotting error for %s; %s' % (f, e))
fig.tight_layout()
ax[1].legend()
fig.savefig(Path(save_dir) / 'results.png', dpi=200)

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utils/google_utils.py
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@ -1,6 +1,4 @@
# This file contains google utils: https://cloud.google.com/storage/docs/reference/libraries
# pip install --upgrade google-cloud-storage
# from google.cloud import storage
# Google utils: https://cloud.google.com/storage/docs/reference/libraries
import os
import platform

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utils/loss.py Normal file
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# Loss functions
import torch
import torch.nn as nn
from utils.general import bbox_iou
from utils.torch_utils import is_parallel
def smooth_BCE(eps=0.1): # https://github.com/ultralytics/yolov3/issues/238#issuecomment-598028441
# return positive, negative label smoothing BCE targets
return 1.0 - 0.5 * eps, 0.5 * eps
class BCEBlurWithLogitsLoss(nn.Module):
# BCEwithLogitLoss() with reduced missing label effects.
def __init__(self, alpha=0.05):
super(BCEBlurWithLogitsLoss, self).__init__()
self.loss_fcn = nn.BCEWithLogitsLoss(reduction='none') # must be nn.BCEWithLogitsLoss()
self.alpha = alpha
def forward(self, pred, true):
loss = self.loss_fcn(pred, true)
pred = torch.sigmoid(pred) # prob from logits
dx = pred - true # reduce only missing label effects
# dx = (pred - true).abs() # reduce missing label and false label effects
alpha_factor = 1 - torch.exp((dx - 1) / (self.alpha + 1e-4))
loss *= alpha_factor
return loss.mean()
class FocalLoss(nn.Module):
# Wraps focal loss around existing loss_fcn(), i.e. criteria = FocalLoss(nn.BCEWithLogitsLoss(), gamma=1.5)
def __init__(self, loss_fcn, gamma=1.5, alpha=0.25):
super(FocalLoss, self).__init__()
self.loss_fcn = loss_fcn # must be nn.BCEWithLogitsLoss()
self.gamma = gamma
self.alpha = alpha
self.reduction = loss_fcn.reduction
self.loss_fcn.reduction = 'none' # required to apply FL to each element
def forward(self, pred, true):
loss = self.loss_fcn(pred, true)
# p_t = torch.exp(-loss)
# loss *= self.alpha * (1.000001 - p_t) ** self.gamma # non-zero power for gradient stability
# TF implementation https://github.com/tensorflow/addons/blob/v0.7.1/tensorflow_addons/losses/focal_loss.py
pred_prob = torch.sigmoid(pred) # prob from logits
p_t = true * pred_prob + (1 - true) * (1 - pred_prob)
alpha_factor = true * self.alpha + (1 - true) * (1 - self.alpha)
modulating_factor = (1.0 - p_t) ** self.gamma
loss *= alpha_factor * modulating_factor
if self.reduction == 'mean':
return loss.mean()
elif self.reduction == 'sum':
return loss.sum()
else: # 'none'
return loss
def compute_loss(p, targets, model): # predictions, targets, model
device = targets.device
lcls, lbox, lobj = torch.zeros(1, device=device), torch.zeros(1, device=device), torch.zeros(1, device=device)
tcls, tbox, indices, anchors = build_targets(p, targets, model) # targets
h = model.hyp # hyperparameters
# Define criteria
BCEcls = nn.BCEWithLogitsLoss(pos_weight=torch.Tensor([h['cls_pw']])).to(device)
BCEobj = nn.BCEWithLogitsLoss(pos_weight=torch.Tensor([h['obj_pw']])).to(device)
# Class label smoothing https://arxiv.org/pdf/1902.04103.pdf eqn 3
cp, cn = smooth_BCE(eps=0.0)
# Focal loss
g = h['fl_gamma'] # focal loss gamma
if g > 0:
BCEcls, BCEobj = FocalLoss(BCEcls, g), FocalLoss(BCEobj, g)
# Losses
nt = 0 # number of targets
no = len(p) # number of outputs
balance = [4.0, 1.0, 0.4] if no == 3 else [4.0, 1.0, 0.4, 0.1] # P3-5 or P3-6
for i, pi in enumerate(p): # layer index, layer predictions
b, a, gj, gi = indices[i] # image, anchor, gridy, gridx
tobj = torch.zeros_like(pi[..., 0], device=device) # target obj
n = b.shape[0] # number of targets
if n:
nt += n # cumulative targets
ps = pi[b, a, gj, gi] # prediction subset corresponding to targets
# Regression
pxy = ps[:, :2].sigmoid() * 2. - 0.5
pwh = (ps[:, 2:4].sigmoid() * 2) ** 2 * anchors[i]
pbox = torch.cat((pxy, pwh), 1).to(device) # predicted box
iou = bbox_iou(pbox.T, tbox[i], x1y1x2y2=False, CIoU=True) # iou(prediction, target)
lbox += (1.0 - iou).mean() # iou loss
# Objectness
tobj[b, a, gj, gi] = (1.0 - model.gr) + model.gr * iou.detach().clamp(0).type(tobj.dtype) # iou ratio
# Classification
if model.nc > 1: # cls loss (only if multiple classes)
t = torch.full_like(ps[:, 5:], cn, device=device) # targets
t[range(n), tcls[i]] = cp
lcls += BCEcls(ps[:, 5:], t) # BCE
# Append targets to text file
# with open('targets.txt', 'a') as file:
# [file.write('%11.5g ' * 4 % tuple(x) + '\n') for x in torch.cat((txy[i], twh[i]), 1)]
lobj += BCEobj(pi[..., 4], tobj) * balance[i] # obj loss
s = 3 / no # output count scaling
lbox *= h['box'] * s
lobj *= h['obj'] * s * (1.4 if no == 4 else 1.)
lcls *= h['cls'] * s
bs = tobj.shape[0] # batch size
loss = lbox + lobj + lcls
return loss * bs, torch.cat((lbox, lobj, lcls, loss)).detach()
def build_targets(p, targets, model):
# Build targets for compute_loss(), input targets(image,class,x,y,w,h)
det = model.module.model[-1] if is_parallel(model) else model.model[-1] # Detect() module
na, nt = det.na, targets.shape[0] # number of anchors, targets
tcls, tbox, indices, anch = [], [], [], []
gain = torch.ones(7, device=targets.device) # normalized to gridspace gain
ai = torch.arange(na, device=targets.device).float().view(na, 1).repeat(1, nt) # same as .repeat_interleave(nt)
targets = torch.cat((targets.repeat(na, 1, 1), ai[:, :, None]), 2) # append anchor indices
g = 0.5 # bias
off = torch.tensor([[0, 0],
[1, 0], [0, 1], [-1, 0], [0, -1], # j,k,l,m
# [1, 1], [1, -1], [-1, 1], [-1, -1], # jk,jm,lk,lm
], device=targets.device).float() * g # offsets
for i in range(det.nl):
anchors = det.anchors[i]
gain[2:6] = torch.tensor(p[i].shape)[[3, 2, 3, 2]] # xyxy gain
# Match targets to anchors
t = targets * gain
if nt:
# Matches
r = t[:, :, 4:6] / anchors[:, None] # wh ratio
j = torch.max(r, 1. / r).max(2)[0] < model.hyp['anchor_t'] # compare
# j = wh_iou(anchors, t[:, 4:6]) > model.hyp['iou_t'] # iou(3,n)=wh_iou(anchors(3,2), gwh(n,2))
t = t[j] # filter
# Offsets
gxy = t[:, 2:4] # grid xy
gxi = gain[[2, 3]] - gxy # inverse
j, k = ((gxy % 1. < g) & (gxy > 1.)).T
l, m = ((gxi % 1. < g) & (gxi > 1.)).T
j = torch.stack((torch.ones_like(j), j, k, l, m))
t = t.repeat((5, 1, 1))[j]
offsets = (torch.zeros_like(gxy)[None] + off[:, None])[j]
else:
t = targets[0]
offsets = 0
# Define
b, c = t[:, :2].long().T # image, class
gxy = t[:, 2:4] # grid xy
gwh = t[:, 4:6] # grid wh
gij = (gxy - offsets).long()
gi, gj = gij.T # grid xy indices
# Append
a = t[:, 6].long() # anchor indices
indices.append((b, a, gj.clamp_(0, gain[3] - 1), gi.clamp_(0, gain[2] - 1))) # image, anchor, grid indices
tbox.append(torch.cat((gxy - gij, gwh), 1)) # box
anch.append(anchors[a]) # anchors
tcls.append(c) # class
return tcls, tbox, indices, anch

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# Model validation metrics
import matplotlib.pyplot as plt
import numpy as np
def fitness(x):
# Model fitness as a weighted combination of metrics
w = [0.0, 0.0, 0.1, 0.9] # weights for [P, R, mAP@0.5, mAP@0.5:0.95]
return (x[:, :4] * w).sum(1)
def ap_per_class(tp, conf, pred_cls, target_cls, plot=False, fname='precision-recall_curve.png'):
""" Compute the average precision, given the recall and precision curves.
Source: https://github.com/rafaelpadilla/Object-Detection-Metrics.
# Arguments
tp: True positives (nparray, nx1 or nx10).
conf: Objectness value from 0-1 (nparray).
pred_cls: Predicted object classes (nparray).
target_cls: True object classes (nparray).
plot: Plot precision-recall curve at mAP@0.5
fname: Plot filename
# Returns
The average precision as computed in py-faster-rcnn.
"""
# Sort by objectness
i = np.argsort(-conf)
tp, conf, pred_cls = tp[i], conf[i], pred_cls[i]
# Find unique classes
unique_classes = np.unique(target_cls)
# Create Precision-Recall curve and compute AP for each class
px, py = np.linspace(0, 1, 1000), [] # for plotting
pr_score = 0.1 # score to evaluate P and R https://github.com/ultralytics/yolov3/issues/898
s = [unique_classes.shape[0], tp.shape[1]] # number class, number iou thresholds (i.e. 10 for mAP0.5...0.95)
ap, p, r = np.zeros(s), np.zeros(s), np.zeros(s)
for ci, c in enumerate(unique_classes):
i = pred_cls == c
n_l = (target_cls == c).sum() # number of labels
n_p = i.sum() # number of predictions
if n_p == 0 or n_l == 0:
continue
else:
# Accumulate FPs and TPs
fpc = (1 - tp[i]).cumsum(0)
tpc = tp[i].cumsum(0)
# Recall
recall = tpc / (n_l + 1e-16) # recall curve
r[ci] = np.interp(-pr_score, -conf[i], recall[:, 0]) # r at pr_score, negative x, xp because xp decreases
# Precision
precision = tpc / (tpc + fpc) # precision curve
p[ci] = np.interp(-pr_score, -conf[i], precision[:, 0]) # p at pr_score
# AP from recall-precision curve
for j in range(tp.shape[1]):
ap[ci, j], mpre, mrec = compute_ap(recall[:, j], precision[:, j])
if j == 0:
py.append(np.interp(px, mrec, mpre)) # precision at mAP@0.5
# Compute F1 score (harmonic mean of precision and recall)
f1 = 2 * p * r / (p + r + 1e-16)
if plot:
py = np.stack(py, axis=1)
fig, ax = plt.subplots(1, 1, figsize=(5, 5))
ax.plot(px, py, linewidth=0.5, color='grey') # plot(recall, precision)
ax.plot(px, py.mean(1), linewidth=2, color='blue', label='all classes %.3f mAP@0.5' % ap[:, 0].mean())
ax.set_xlabel('Recall')
ax.set_ylabel('Precision')
ax.set_xlim(0, 1)
ax.set_ylim(0, 1)
plt.legend()
fig.tight_layout()
fig.savefig(fname, dpi=200)
return p, r, ap, f1, unique_classes.astype('int32')
def compute_ap(recall, precision):
""" Compute the average precision, given the recall and precision curves.
Source: https://github.com/rbgirshick/py-faster-rcnn.
# Arguments
recall: The recall curve (list).
precision: The precision curve (list).
# Returns
The average precision as computed in py-faster-rcnn.
"""
# Append sentinel values to beginning and end
mrec = recall # np.concatenate(([0.], recall, [recall[-1] + 1E-3]))
mpre = precision # np.concatenate(([0.], precision, [0.]))
# Compute the precision envelope
mpre = np.flip(np.maximum.accumulate(np.flip(mpre)))
# Integrate area under curve
method = 'interp' # methods: 'continuous', 'interp'
if method == 'interp':
x = np.linspace(0, 1, 101) # 101-point interp (COCO)
ap = np.trapz(np.interp(x, mrec, mpre), x) # integrate
else: # 'continuous'
i = np.where(mrec[1:] != mrec[:-1])[0] # points where x axis (recall) changes
ap = np.sum((mrec[i + 1] - mrec[i]) * mpre[i + 1]) # area under curve
return ap, mpre, mrec

377
utils/plots.py Normal file
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@ -0,0 +1,377 @@
# Plotting utils
import glob
import math
import os
import random
from copy import copy
from pathlib import Path
import cv2
import matplotlib
import matplotlib.pyplot as plt
import numpy as np
import torch
import yaml
from PIL import Image
from scipy.signal import butter, filtfilt
from utils.general import xywh2xyxy, xyxy2xywh
from utils.metrics import fitness
def color_list():
# Return first 10 plt colors as (r,g,b) https://stackoverflow.com/questions/51350872/python-from-color-name-to-rgb
def hex2rgb(h):
return tuple(int(h[1 + i:1 + i + 2], 16) for i in (0, 2, 4))
return [hex2rgb(h) for h in plt.rcParams['axes.prop_cycle'].by_key()['color']]
def hist2d(x, y, n=100):
# 2d histogram used in labels.png and evolve.png
xedges, yedges = np.linspace(x.min(), x.max(), n), np.linspace(y.min(), y.max(), n)
hist, xedges, yedges = np.histogram2d(x, y, (xedges, yedges))
xidx = np.clip(np.digitize(x, xedges) - 1, 0, hist.shape[0] - 1)
yidx = np.clip(np.digitize(y, yedges) - 1, 0, hist.shape[1] - 1)
return np.log(hist[xidx, yidx])
def butter_lowpass_filtfilt(data, cutoff=1500, fs=50000, order=5):
# https://stackoverflow.com/questions/28536191/how-to-filter-smooth-with-scipy-numpy
def butter_lowpass(cutoff, fs, order):
nyq = 0.5 * fs
normal_cutoff = cutoff / nyq
return butter(order, normal_cutoff, btype='low', analog=False)
b, a = butter_lowpass(cutoff, fs, order=order)
return filtfilt(b, a, data) # forward-backward filter
def plot_one_box(x, img, color=None, label=None, line_thickness=None):
# Plots one bounding box on image img
tl = line_thickness or round(0.002 * (img.shape[0] + img.shape[1]) / 2) + 1 # line/font thickness
color = color or [random.randint(0, 255) for _ in range(3)]
c1, c2 = (int(x[0]), int(x[1])), (int(x[2]), int(x[3]))
cv2.rectangle(img, c1, c2, color, thickness=tl, lineType=cv2.LINE_AA)
if label:
tf = max(tl - 1, 1) # font thickness
t_size = cv2.getTextSize(label, 0, fontScale=tl / 3, thickness=tf)[0]
c2 = c1[0] + t_size[0], c1[1] - t_size[1] - 3
cv2.rectangle(img, c1, c2, color, -1, cv2.LINE_AA) # filled
cv2.putText(img, label, (c1[0], c1[1] - 2), 0, tl / 3, [225, 255, 255], thickness=tf, lineType=cv2.LINE_AA)
def plot_wh_methods(): # from utils.general import *; plot_wh_methods()
# Compares the two methods for width-height anchor multiplication
# https://github.com/ultralytics/yolov3/issues/168
x = np.arange(-4.0, 4.0, .1)
ya = np.exp(x)
yb = torch.sigmoid(torch.from_numpy(x)).numpy() * 2
fig = plt.figure(figsize=(6, 3), dpi=150)
plt.plot(x, ya, '.-', label='YOLOv3')
plt.plot(x, yb ** 2, '.-', label='YOLOv5 ^2')
plt.plot(x, yb ** 1.6, '.-', label='YOLOv5 ^1.6')
plt.xlim(left=-4, right=4)
plt.ylim(bottom=0, top=6)
plt.xlabel('input')
plt.ylabel('output')
plt.grid()
plt.legend()
fig.tight_layout()
fig.savefig('comparison.png', dpi=200)
def output_to_target(output, width, height):
# Convert model output to target format [batch_id, class_id, x, y, w, h, conf]
if isinstance(output, torch.Tensor):
output = output.cpu().numpy()
targets = []
for i, o in enumerate(output):
if o is not None:
for pred in o:
box = pred[:4]
w = (box[2] - box[0]) / width
h = (box[3] - box[1]) / height
x = box[0] / width + w / 2
y = box[1] / height + h / 2
conf = pred[4]
cls = int(pred[5])
targets.append([i, cls, x, y, w, h, conf])
return np.array(targets)
def plot_images(images, targets, paths=None, fname='images.jpg', names=None, max_size=640, max_subplots=16):
# Plot image grid with labels
if isinstance(images, torch.Tensor):
images = images.cpu().float().numpy()
if isinstance(targets, torch.Tensor):
targets = targets.cpu().numpy()
# un-normalise
if np.max(images[0]) <= 1:
images *= 255
tl = 3 # line thickness
tf = max(tl - 1, 1) # font thickness
bs, _, h, w = images.shape # batch size, _, height, width
bs = min(bs, max_subplots) # limit plot images
ns = np.ceil(bs ** 0.5) # number of subplots (square)
# Check if we should resize
scale_factor = max_size / max(h, w)
if scale_factor < 1:
h = math.ceil(scale_factor * h)
w = math.ceil(scale_factor * w)
colors = color_list() # list of colors
mosaic = np.full((int(ns * h), int(ns * w), 3), 255, dtype=np.uint8) # init
for i, img in enumerate(images):
if i == max_subplots: # if last batch has fewer images than we expect
break
block_x = int(w * (i // ns))
block_y = int(h * (i % ns))
img = img.transpose(1, 2, 0)
if scale_factor < 1:
img = cv2.resize(img, (w, h))
mosaic[block_y:block_y + h, block_x:block_x + w, :] = img
if len(targets) > 0:
image_targets = targets[targets[:, 0] == i]
boxes = xywh2xyxy(image_targets[:, 2:6]).T
classes = image_targets[:, 1].astype('int')
labels = image_targets.shape[1] == 6 # labels if no conf column
conf = None if labels else image_targets[:, 6] # check for confidence presence (label vs pred)
boxes[[0, 2]] *= w
boxes[[0, 2]] += block_x
boxes[[1, 3]] *= h
boxes[[1, 3]] += block_y
for j, box in enumerate(boxes.T):
cls = int(classes[j])
color = colors[cls % len(colors)]
cls = names[cls] if names else cls
if labels or conf[j] > 0.3: # 0.3 conf thresh
label = '%s' % cls if labels else '%s %.1f' % (cls, conf[j])
plot_one_box(box, mosaic, label=label, color=color, line_thickness=tl)
# Draw image filename labels
if paths is not None:
label = os.path.basename(paths[i])[:40] # trim to 40 char
t_size = cv2.getTextSize(label, 0, fontScale=tl / 3, thickness=tf)[0]
cv2.putText(mosaic, label, (block_x + 5, block_y + t_size[1] + 5), 0, tl / 3, [220, 220, 220], thickness=tf,
lineType=cv2.LINE_AA)
# Image border
cv2.rectangle(mosaic, (block_x, block_y), (block_x + w, block_y + h), (255, 255, 255), thickness=3)
if fname is not None:
r = min(1280. / max(h, w) / ns, 1.0) # ratio to limit image size
mosaic = cv2.resize(mosaic, (int(ns * w * r), int(ns * h * r)), interpolation=cv2.INTER_AREA)
# cv2.imwrite(fname, cv2.cvtColor(mosaic, cv2.COLOR_BGR2RGB)) # cv2 save
Image.fromarray(mosaic).save(fname) # PIL save
return mosaic
def plot_lr_scheduler(optimizer, scheduler, epochs=300, save_dir=''):
# Plot LR simulating training for full epochs
optimizer, scheduler = copy(optimizer), copy(scheduler) # do not modify originals
y = []
for _ in range(epochs):
scheduler.step()
y.append(optimizer.param_groups[0]['lr'])
plt.plot(y, '.-', label='LR')
plt.xlabel('epoch')
plt.ylabel('LR')
plt.grid()
plt.xlim(0, epochs)
plt.ylim(0)
plt.tight_layout()
plt.savefig(Path(save_dir) / 'LR.png', dpi=200)
def plot_test_txt(): # from utils.general import *; plot_test()
# Plot test.txt histograms
x = np.loadtxt('test.txt', dtype=np.float32)
box = xyxy2xywh(x[:, :4])
cx, cy = box[:, 0], box[:, 1]
fig, ax = plt.subplots(1, 1, figsize=(6, 6), tight_layout=True)
ax.hist2d(cx, cy, bins=600, cmax=10, cmin=0)
ax.set_aspect('equal')
plt.savefig('hist2d.png', dpi=300)
fig, ax = plt.subplots(1, 2, figsize=(12, 6), tight_layout=True)
ax[0].hist(cx, bins=600)
ax[1].hist(cy, bins=600)
plt.savefig('hist1d.png', dpi=200)
def plot_targets_txt(): # from utils.general import *; plot_targets_txt()
# Plot targets.txt histograms
x = np.loadtxt('targets.txt', dtype=np.float32).T
s = ['x targets', 'y targets', 'width targets', 'height targets']
fig, ax = plt.subplots(2, 2, figsize=(8, 8), tight_layout=True)
ax = ax.ravel()
for i in range(4):
ax[i].hist(x[i], bins=100, label='%.3g +/- %.3g' % (x[i].mean(), x[i].std()))
ax[i].legend()
ax[i].set_title(s[i])
plt.savefig('targets.jpg', dpi=200)
def plot_study_txt(f='study.txt', x=None): # from utils.general import *; plot_study_txt()
# Plot study.txt generated by test.py
fig, ax = plt.subplots(2, 4, figsize=(10, 6), tight_layout=True)
ax = ax.ravel()
fig2, ax2 = plt.subplots(1, 1, figsize=(8, 4), tight_layout=True)
for f in ['study/study_coco_yolov5%s.txt' % x for x in ['s', 'm', 'l', 'x']]:
y = np.loadtxt(f, dtype=np.float32, usecols=[0, 1, 2, 3, 7, 8, 9], ndmin=2).T
x = np.arange(y.shape[1]) if x is None else np.array(x)
s = ['P', 'R', 'mAP@.5', 'mAP@.5:.95', 't_inference (ms/img)', 't_NMS (ms/img)', 't_total (ms/img)']
for i in range(7):
ax[i].plot(x, y[i], '.-', linewidth=2, markersize=8)
ax[i].set_title(s[i])
j = y[3].argmax() + 1
ax2.plot(y[6, :j], y[3, :j] * 1E2, '.-', linewidth=2, markersize=8,
label=Path(f).stem.replace('study_coco_', '').replace('yolo', 'YOLO'))
ax2.plot(1E3 / np.array([209, 140, 97, 58, 35, 18]), [34.6, 40.5, 43.0, 47.5, 49.7, 51.5],
'k.-', linewidth=2, markersize=8, alpha=.25, label='EfficientDet')
ax2.grid()
ax2.set_xlim(0, 30)
ax2.set_ylim(28, 50)
ax2.set_yticks(np.arange(30, 55, 5))
ax2.set_xlabel('GPU Speed (ms/img)')
ax2.set_ylabel('COCO AP val')
ax2.legend(loc='lower right')
plt.savefig('study_mAP_latency.png', dpi=300)
plt.savefig(f.replace('.txt', '.png'), dpi=300)
def plot_labels(labels, save_dir=''):
# plot dataset labels
c, b = labels[:, 0], labels[:, 1:].transpose() # classes, boxes
nc = int(c.max() + 1) # number of classes
fig, ax = plt.subplots(2, 2, figsize=(8, 8), tight_layout=True)
ax = ax.ravel()
ax[0].hist(c, bins=np.linspace(0, nc, nc + 1) - 0.5, rwidth=0.8)
ax[0].set_xlabel('classes')
ax[1].scatter(b[0], b[1], c=hist2d(b[0], b[1], 90), cmap='jet')
ax[1].set_xlabel('x')
ax[1].set_ylabel('y')
ax[2].scatter(b[2], b[3], c=hist2d(b[2], b[3], 90), cmap='jet')
ax[2].set_xlabel('width')
ax[2].set_ylabel('height')
plt.savefig(Path(save_dir) / 'labels.png', dpi=200)
plt.close()
# seaborn correlogram
try:
import seaborn as sns
import pandas as pd
x = pd.DataFrame(b.transpose(), columns=['x', 'y', 'width', 'height'])
sns.pairplot(x, corner=True, diag_kind='hist', kind='scatter', markers='o',
plot_kws=dict(s=3, edgecolor=None, linewidth=1, alpha=0.02),
diag_kws=dict(bins=50))
plt.savefig(Path(save_dir) / 'labels_correlogram.png', dpi=200)
plt.close()
except Exception as e:
pass
def plot_evolution(yaml_file='data/hyp.finetune.yaml'): # from utils.general import *; plot_evolution()
# Plot hyperparameter evolution results in evolve.txt
with open(yaml_file) as f:
hyp = yaml.load(f, Loader=yaml.FullLoader)
x = np.loadtxt('evolve.txt', ndmin=2)
f = fitness(x)
# weights = (f - f.min()) ** 2 # for weighted results
plt.figure(figsize=(10, 12), tight_layout=True)
matplotlib.rc('font', **{'size': 8})
for i, (k, v) in enumerate(hyp.items()):
y = x[:, i + 7]
# mu = (y * weights).sum() / weights.sum() # best weighted result
mu = y[f.argmax()] # best single result
plt.subplot(6, 5, i + 1)
plt.scatter(y, f, c=hist2d(y, f, 20), cmap='viridis', alpha=.8, edgecolors='none')
plt.plot(mu, f.max(), 'k+', markersize=15)
plt.title('%s = %.3g' % (k, mu), fontdict={'size': 9}) # limit to 40 characters
if i % 5 != 0:
plt.yticks([])
print('%15s: %.3g' % (k, mu))
plt.savefig('evolve.png', dpi=200)
print('\nPlot saved as evolve.png')
def plot_results_overlay(start=0, stop=0): # from utils.general import *; plot_results_overlay()
# Plot training 'results*.txt', overlaying train and val losses
s = ['train', 'train', 'train', 'Precision', 'mAP@0.5', 'val', 'val', 'val', 'Recall', 'mAP@0.5:0.95'] # legends
t = ['Box', 'Objectness', 'Classification', 'P-R', 'mAP-F1'] # titles
for f in sorted(glob.glob('results*.txt') + glob.glob('../../Downloads/results*.txt')):
results = np.loadtxt(f, usecols=[2, 3, 4, 8, 9, 12, 13, 14, 10, 11], ndmin=2).T
n = results.shape[1] # number of rows
x = range(start, min(stop, n) if stop else n)
fig, ax = plt.subplots(1, 5, figsize=(14, 3.5), tight_layout=True)
ax = ax.ravel()
for i in range(5):
for j in [i, i + 5]:
y = results[j, x]
ax[i].plot(x, y, marker='.', label=s[j])
# y_smooth = butter_lowpass_filtfilt(y)
# ax[i].plot(x, np.gradient(y_smooth), marker='.', label=s[j])
ax[i].set_title(t[i])
ax[i].legend()
ax[i].set_ylabel(f) if i == 0 else None # add filename
fig.savefig(f.replace('.txt', '.png'), dpi=200)
def plot_results(start=0, stop=0, bucket='', id=(), labels=(), save_dir=''):
# from utils.general import *; plot_results(save_dir='runs/train/exp0')
# Plot training 'results*.txt' as seen in https://github.com/ultralytics/yolov5#reproduce-our-training
fig, ax = plt.subplots(2, 5, figsize=(12, 6))
ax = ax.ravel()
s = ['Box', 'Objectness', 'Classification', 'Precision', 'Recall',
'val Box', 'val Objectness', 'val Classification', 'mAP@0.5', 'mAP@0.5:0.95']
if bucket:
# os.system('rm -rf storage.googleapis.com')
# files = ['https://storage.googleapis.com/%s/results%g.txt' % (bucket, x) for x in id]
files = ['results%g.txt' % x for x in id]
c = ('gsutil cp ' + '%s ' * len(files) + '.') % tuple('gs://%s/results%g.txt' % (bucket, x) for x in id)
os.system(c)
else:
files = glob.glob(str(Path(save_dir) / 'results*.txt')) + glob.glob('../../Downloads/results*.txt')
assert len(files), 'No results.txt files found in %s, nothing to plot.' % os.path.abspath(save_dir)
for fi, f in enumerate(files):
try:
results = np.loadtxt(f, usecols=[2, 3, 4, 8, 9, 12, 13, 14, 10, 11], ndmin=2).T
n = results.shape[1] # number of rows
x = range(start, min(stop, n) if stop else n)
for i in range(10):
y = results[i, x]
if i in [0, 1, 2, 5, 6, 7]:
y[y == 0] = np.nan # don't show zero loss values
# y /= y[0] # normalize
label = labels[fi] if len(labels) else Path(f).stem
ax[i].plot(x, y, marker='.', label=label, linewidth=1, markersize=6)
ax[i].set_title(s[i])
# if i in [5, 6, 7]: # share train and val loss y axes
# ax[i].get_shared_y_axes().join(ax[i], ax[i - 5])
except Exception as e:
print('Warning: Plotting error for %s; %s' % (f, e))
fig.tight_layout()
ax[1].legend()
fig.savefig(Path(save_dir) / 'results.png', dpi=200)

23
utils/torch_utils.py
View File

@ -1,7 +1,10 @@
# PyTorch utils
import logging
import math
import os
import time
from contextlib import contextmanager
from copy import deepcopy
import torch
@ -13,10 +16,21 @@ import torchvision
logger = logging.getLogger(__name__)
def init_torch_seeds(seed=0):
torch.manual_seed(seed)
@contextmanager
def torch_distributed_zero_first(local_rank: int):
"""
Decorator to make all processes in distributed training wait for each local_master to do something.
"""
if local_rank not in [-1, 0]:
torch.distributed.barrier()
yield
if local_rank == 0:
torch.distributed.barrier()
def init_torch_seeds(seed=0):
# Speed-reproducibility tradeoff https://pytorch.org/docs/stable/notes/randomness.html
torch.manual_seed(seed)
if seed == 0: # slower, more reproducible
cudnn.deterministic = True
cudnn.benchmark = False
@ -104,8 +118,6 @@ def prune(model, amount=0.3):
def fuse_conv_and_bn(conv, bn):
# Fuse convolution and batchnorm layers https://tehnokv.com/posts/fusing-batchnorm-and-conv/
# init
fusedconv = nn.Conv2d(conv.in_channels,
conv.out_channels,
kernel_size=conv.kernel_size,
@ -145,8 +157,7 @@ def model_info(model, verbose=False):
except ImportError:
fs = ''
logger.info(
'Model Summary: %g layers, %g parameters, %g gradients%s' % (len(list(model.parameters())), n_p, n_g, fs))
logger.info(f"Model Summary: {len(list(model.modules()))} layers, {n_p} parameters, {n_g} gradients{fs}")
def load_classifier(name='resnet101', n=2):